Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0164
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.83 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 561 WYWYNLGICDLGTGITLVFAILV 493
           W W+ +G CD   G+T VF I V
Sbjct: 234 WEWHTVGNCD---GLTSVFRIQV 253


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 QIPRSQKPRLYQYQDRKYQG 548
           ++PR  + R+ +Y + +YQG
Sbjct: 403 KLPREMRQRITEYFEHRYQG 422


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 QIPRSQKPRLYQYQDRKYQG 548
           ++PR  + R+ +Y + +YQG
Sbjct: 371 KLPREMRQRITEYFEHRYQG 390


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 515 VIPVPRSQIPRLYQYQYQEYVSDLYDLLETASKLQKWNR 631
           V P+  S  P  +Q     Y+   YD  E A K   W +
Sbjct: 391 VPPISGSATPVFHQEMALYYLKPSYDAQEPAWKTHVWKK 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,346
Number of Sequences: 438
Number of extensions: 5075
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)