Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0164
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17700.1 68416.m02259 cyclic nucleotide-binding transporter 1...    32   0.39 
At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib...    29   3.6  
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib...    29   3.6  
At5g14300.1 68418.m01672 prohibitin, putative similar to prohibi...    28   6.3  
At3g49520.1 68416.m05412 F-box family protein contains weak hit ...    28   6.3  

>At3g17700.1 68416.m02259 cyclic nucleotide-binding transporter 1 /
           CNBT1 (CNGC20) identical to cyclic nucleotide-binding
           transporter 1 (CNBT1) GI:8131898 from [Arabidopsis
           thaliana]; member of the cyclic nucleotide-gated channel
           (CNGC) family- see PMID:11500563
          Length = 764

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -2

Query: 621 FWSFEAVSNRS*RSL-TYSWYWYWYNLGICDLGTGITLVFAILVFGMLQPIQT*THYNTE 445
           FW F+ +S  +   + +Y     ++ +GI  LG    L+FA+L+  M   +Q     N E
Sbjct: 468 FWGFQQISTLAGNQVPSYFLGEVFFTMGIIGLGL---LLFALLIGNMQNFLQALGKRNLE 524

Query: 444 YSLRRNSYNIYLCRLRLRYSIK 379
            +LRR     ++   RL   I+
Sbjct: 525 MTLRRRDVEQWMSHRRLPDGIR 546


>At4g30310.3 68417.m04309 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 451

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 432 ASKNTPC-YNAFRFGSAAAYQIPRSQKPRLYQYQDRKYQGYTNTNTKNMSVTSM 590
           A KN P  ++A +  +AA   +  S  P++ +Y D KY+ + N   + +S  S+
Sbjct: 392 AGKNYPSLHDAMKALNAAGQVVHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSI 445


>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 579

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 432 ASKNTPC-YNAFRFGSAAAYQIPRSQKPRLYQYQDRKYQGYTNTNTKNMSVTSM 590
           A KN P  ++A +  +AA   +  S  P++ +Y D KY+ + N   + +S  S+
Sbjct: 520 AGKNYPSLHDAMKALNAAGQVVHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSI 573


>At5g14300.1 68418.m01672 prohibitin, putative similar to prohibitin
           [Arabidopsis thaliana] GI:1946331; contains Pfam profile
           PF01145: SPFH domain / Band 7 family
          Length = 249

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 471 GSAAAYQIPRSQKPRLYQYQDRKYQGYTNTNTKNMSVTSMT 593
           G     +IP  QKP ++  + + Y+  T++ TK++ + ++T
Sbjct: 48  GEGTHRKIPWVQKPYIFDIRTKPYKINTDSGTKDLQMVNLT 88


>At3g49520.1 68416.m05412 F-box family protein contains weak hit to
           Pfam:PF00646 F-box domain and weak hit to TIGRFAM
           TIGR01640 : F-box protein interaction domain
          Length = 388

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 807 WSRTKLRRFKISSG*ACMKKIQASLINKFQQEFLYDFHDASFKLNSEIKIEELIN 643
           W  TK+    +S   +   K+  SLIN    +FL  F   SF ++ E K+  L +
Sbjct: 283 WISTKIEPNAVSW--STFLKVDMSLINGLTDDFLIRFEPKSFFIDEEKKVAVLFD 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,535
Number of Sequences: 28952
Number of extensions: 303329
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)