Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0163
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              29   0.021
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.35 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   5.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.9  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 28.7 bits (61), Expect = 0.021
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 165 MKEFRLNGLDSPYNPDEDNI 224
           M+EFR NG D  Y PD DN+
Sbjct: 1   MEEFRHNGRDFEYCPDLDNV 20


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 222 CCPRRDCTEN-PSRSV*TPSSRHPESIYRSSD 130
           CC +    ++ P RS+ +   R+P SI+R +D
Sbjct: 366 CCGKWSSQKSEPRRSIYSSLLRYPRSIFRQTD 397


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 202 TIPTRTTSGAREQLQIHRP 258
           T+PT T SG+  +L  H P
Sbjct: 366 TLPTSTYSGSPTELPKHLP 384


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 291  PAPERPPKVP 320
            P PERP +VP
Sbjct: 1364 PVPERPERVP 1373


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 29  KWELGGFVFVKPRYSTSFKSV 91
           +W+LG F  V  +  +S KSV
Sbjct: 186 RWDLGKFHRVCTQIGSSMKSV 206


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5   YYNYSDYGKWELGGFVFVKPRYS-TSFKSVFRLECHQ 112
           +++YS+  KW   G + +K + +   FK     +C++
Sbjct: 499 WFDYSEVSKWVQKGQICLKEKENEIDFKIEVTEDCNK 535


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 6/33 (18%), Positives = 17/33 (51%)
 Frame = -2

Query: 275 GVRVPLGRCICNCSRAPDVVLVGIVRRIQAVQS 177
           G    +G+C+  C     + ++GI  ++  +++
Sbjct: 14  GANSGIGKCLIECLVGKGMKVIGIAPQVDKMKT 46


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 82  ERSGISWLNEDESTEL 35
           E SG+  + +DEST L
Sbjct: 242 ENSGVVHVAQDESTSL 257


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 82  ERSGISWLNEDESTEL 35
           E SG+  + +DEST L
Sbjct: 242 ENSGVVHVAQDESTSL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,547
Number of Sequences: 438
Number of extensions: 2402
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)