Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0162
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241...    30   1.6  
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    28   8.5  
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907...    28   8.5  

>06_01_0335 +
           2412766-2415655,2416108-2416208,2416871-2416895,
           2416977-2417049,2417191-2417373,2418164-2418227,
           2418427-2418447,2418862-2418905,2420575-2420650,
           2421359-2421373
          Length = 1163

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 106 VSTVVKIFFNAFY*CQLKFLDWLHYSSLPP 17
           +S++  +  NAF    L+ L+WLHY S PP
Sbjct: 744 LSSLQSLRINAFDVSSLRNLEWLHYISSPP 773


>09_04_0501 +
           18153252-18153453,18153973-18154224,18154809-18155015,
           18155198-18157046,18157334-18157381,18158222-18158291,
           18158380-18158475,18158583-18158621,18158714-18158924,
           18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 381 QGQVCP*R*GVEGTHQGGTRDRMREMYRSPEEGYSTCYRPSN 506
           +G VC      EG  + G R R RE+     E YS C RPS+
Sbjct: 220 KGSVCVAERRREGRGEEGRR-RSRELMEMEMEMYSRCARPSH 260


>03_03_0274 - 16089322-16089365,16089604-16089616,16090367-16090714,
            16090771-16090974,16091403-16091504,16091710-16091741,
            16092668-16093655,16094461-16094711,16095786-16097795,
            16097903-16097954
          Length = 1347

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 443  PNARNVPKPRRRVL 484
            P A NVP+PRRRVL
Sbjct: 1013 PGAANVPRPRRRVL 1026


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,277,973
Number of Sequences: 37544
Number of extensions: 321020
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)