Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0162
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17) 29 2.8
SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3) 29 2.8
SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 4.9
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05) 28 8.6
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 8.6
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 8.6
>SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17)
Length = 849
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 182 SVSSCTTVLSYTPSI*IPSSHSACLPFWP 268
S S T V+ +TP I +H+ C+PFWP
Sbjct: 656 SYFSLTKVVEFTPFHLI-DNHTECIPFWP 683
>SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3)
Length = 129
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 392 VPLTLRS*RNTSGRHSRPNARNVPKPRRRVLDVLSAI 502
V LT R T G HS+ N RN+ + RVL +L I
Sbjct: 22 VILTFLWQRKTPGEHSKTNKRNMDNRKMRVLKMLLTI 58
>SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 87 ILTTVETEILVLMSQVLTSIYRQSYGDIYHKHQLAPVQRYYLTHHQYE-FPH 239
+ T+ T +++ + V+T I R + YH Q P QR HHQ + PH
Sbjct: 444 LAVTIMT-VVMSTTTVITRITRTIKTEYYHHQQHRPPQRQQYFHHQQQRKPH 494
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 388 RCAPDAKELKEHIREALETECAKCTEAQKKGTRRV 492
+C+P+A L + +REA + KC +A + R+
Sbjct: 1608 QCSPNAATLTKALREACQLRFQKCLDAHPEAAARI 1642
>SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 28.7 bits (61), Expect = 4.9
Identities = 8/41 (19%), Positives = 21/41 (51%)
Frame = +1
Query: 463 EAQKKGTRRVIGHLINNESKSWNELTAKYDPENKFTAKYEK 585
+ + GT+ + G + K W E+ Y+ +N + ++++
Sbjct: 83 KVSESGTKNIFGGYSSKRMKDWQEIIRLYEKDNVYLGEFDE 123
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +1
Query: 400 DAKELKEHIREALETECAKCTEAQKK-----GTRRVIGHLINNESKSWNELTAKYDPENK 564
+ ++ K + ALE AK TE ++ +++ + E++ NELT++ +
Sbjct: 2350 ELRKAKTELESALEEAKAKITEKEESLVAFAAESKIVRDQLERETEEKNELTSQIESLVD 2409
Query: 565 FTAKYEKELREIKA*DTNAKLSYEM 639
KYE+ + + N K + +M
Sbjct: 2410 KVKKYEEASSTVMKENENLKRNLQM 2434
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -2
Query: 567 KFIFGVVFSGQLIPGFAFVIN*MADNTSSTLLLGFGTFRAFGLECLPD--VFLQLLSVRG 394
+F FG+ G + P F+F + A +S+ GF T + E P F SV G
Sbjct: 2545 QFSFGIPKRGDMTPQFSFGVKPQASQPASSSFAGFTTQKE---ETFPSKITFGAHSSVFG 2601
Query: 393 TPVLVE 376
+PV+ E
Sbjct: 2602 SPVVQE 2607
>SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
Length = 215
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Frame = +1
Query: 352 LKPYIKCILD-KDRCAPDAKELKEHIR--EALETECAKCTEAQKKGTRRVIGHLINNESK 522
L P +C LD K RC P + T T + T+ +GHL SK
Sbjct: 134 LPPKKRCNLDGKKRCTPKVTPIPSTTATPSTAVTSSTPPTSTSMQTTKHSVGHLQTTVSK 193
Query: 523 SWNELTAKYDPENKFTAKYEK 585
S + T + AK E+
Sbjct: 194 SLKKGTKPKNETESVAAKAEE 214
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 304 RYDNVNLDEVLSNSR-LLKPYIKCILDK 384
R DN+ L EVL N R LL+PY+K + ++
Sbjct: 3893 RKDNI-LHEVLKNGRELLRPYLKALFNR 3919
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 207 YLTHHQYEFPHRILPVCRFGRGSRQT*RQVHRS 305
YL H+ + R+L V GR R+T ++HR+
Sbjct: 4151 YLFQHEPTYIQRVLVVVTSGRPDRRTFHRIHRT 4183
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 490 HVEYPSSGLRYI-SRIRSRVPP*CVPSTP*R 401
H+ YP S LRY+ S +R PP P +P R
Sbjct: 401 HLRYPPSSLRYLPSHLRYPPPPLRYPPSPLR 431
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,383,120
Number of Sequences: 59808
Number of extensions: 395749
Number of successful extensions: 1088
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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