Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0162
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr...    31   0.76 
At3g56960.1 68416.m06338 phosphatidylinositol-4-phosphate 5-kina...    31   1.0  
At3g47640.1 68416.m05186 basic helix-loop-helix (bHLH) family pr...    28   7.1  
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,...    28   7.1  
At5g45480.1 68418.m05587 expressed protein contains Pfam domain,...    27   9.3  
At1g05380.1 68414.m00546 PHD finger transcription factor, putative     27   9.3  

>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
           protein / kinesin motor family protein similar to
           kinesin-like protein GB:CAB41097 GI:5541717 from
           [Arabidopsis thaliana]; contains Pfam profiles PF00225:
           Kinesin motor domain, PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 894

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +1

Query: 286 DDKYTDRYDNVNLDEVLS-NSRLLKPYIKCILDKDRCAPDA-KELKEHIREALETECAKC 459
           D K   +   V LD+V++ N R LK +   +   +R A +   E++++  EALE E  KC
Sbjct: 413 DYKSLSKKLEVQLDKVIAENERQLKAFDDDVERINRQAQNRISEVEKNFAEALEKEKLKC 472

Query: 460 TEAQKKGTRRVIGHLINNESKSWN 531
                +  +++   LI+N+    N
Sbjct: 473 QMEYMESVKKLEEKLISNQRNHEN 496


>At3g56960.1 68416.m06338 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 779

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 138 TSIYRQSYGDIYHKHQLAPVQRYYLTHHQYEFPH 239
           TS  R S G++YH  ++ P   YY       FPH
Sbjct: 54  TSTNRSSIGELYHAERILPNGDYYTGQWYDSFPH 87


>At3g47640.1 68416.m05186 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 240

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +3

Query: 72  NALKKILTTVETEILVLMSQVLTSIYRQSYGDIYHKHQLAPVQRYYLTHHQYEFPHRI-- 245
           N LK+  + +ETEI  L +++      QS  D+      +P   Y+  H+Q + P R+  
Sbjct: 103 NELKEETSVLETEISKLQNEIEARA-NQSKPDL----NTSPAPEYHHHHYQQQHPERVSQ 157

Query: 246 ---LPVCRFGRGSRQT*RQVH 299
              LP+ + G G +Q+   +H
Sbjct: 158 FPGLPIFQ-GPGFQQSATTLH 177


>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
           transcription complex, subunit 8 (CAF1-like protein,
           CALIFp) [Homo sapiens]
          Length = 280

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +1

Query: 382 KDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYD 552
           +D  APD+ EL        E  C    E+++     +   L+ NE  SW    + YD
Sbjct: 118 RDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYD 174


>At5g45480.1 68418.m05587 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 877

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = +1

Query: 289 DKYTDRYDNVNLDEVLSNSRLLKPYIKCILDKDRCAPDAKELKEHIREALETECAKC--T 462
           ++Y + Y N    EV + S    P++K IL++     + K  K H  E L+   +K    
Sbjct: 396 EEYDECYKNTQSHEVPNTSTKKTPFLKRILNRILRVRELKTEKSH--EVLDKSTSKIPGQ 453

Query: 463 EAQKKGTRRVIGHLINNES---KSWNE 534
           E   K  + +  H + + S   + W+E
Sbjct: 454 EVPDKSAKTIPCHKVLDTSFMYRRWSE 480


>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
          Length = 600

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 391 CAPDAKELKEHIR-EALETECAKCTEAQKKGTRRVIGHLINNESKS 525
           C P   EL  H R E      + C    K GT+ V+GH+ ++   S
Sbjct: 462 CKPK-DELSRHFRGEESGISSSPCQITLKSGTKHVLGHICDDTGSS 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,660
Number of Sequences: 28952
Number of extensions: 270221
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)