Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0156
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    29   0.50 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   6.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   6.1  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   8.1  

>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -2

Query: 448 TRADSQEVLPPVYSAL-SVLL-DGTLC-FNCFSNNNALV*VLSKIKTTHIFFHTLRFCQT 278
           T    Q V P + +AL SVL    T C F+   +  ALV V S I    +FF T R+   
Sbjct: 112 TNTTKQNVDPEISNALWSVLTWKNTSCSFSTLMSILALVYVPSWINLPRLFFRTFRYVFL 171

Query: 277 VISFIE 260
           + S IE
Sbjct: 172 ITSIIE 177


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 403 LSVLLDGTLCFNCFSNNNALV*VLSKIKTTHIFFHTLRFCQTVISFIEKDQFIS*NAL 230
           L  L DG+L F   + N +   ++SK+K    F+    FC      IE+  +IS N++
Sbjct: 25  LKKLADGSLKFLYTNKNLSQDSLVSKLKGNEAFYKPFLFC--CAKKIERHIYISLNSI 80


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 482 LHGRNRQGGGTHPRGLTRGPTTSVLSF 402
           LHG  R+ GG +  GL+      VLSF
Sbjct: 848 LHGEIREKGGAYGAGLSYSGIDGVLSF 874


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 523 ISSKVTLQTETHCCFTAEIGRVVVPTRADSQEVLPPVYSALSVLLDGTL-CFNCFSNNNA 347
           ISS  T + +  CC   E+GR+    ++ +Q  L  + S++ V + G +    C  N+  
Sbjct: 431 ISSSNTNEGDVVCCTAPEVGRIANAWQSGTQPSL--IESSMYVPIKGFVQDIKCIQNSRE 488

Query: 346 LV*VLSKIKT 317
              ++S+  T
Sbjct: 489 RNELVSQFNT 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,138
Number of Sequences: 5004
Number of extensions: 63748
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)