Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0156
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17410.2 68418.m02043 tubulin family protein similar to spind...    27   9.3  
At5g17410.1 68418.m02042 tubulin family protein similar to spind...    27   9.3  
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    27   9.3  

>At5g17410.2 68418.m02043 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 679

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 567 LQ*PLNTRWTVSSSTHLSNKKENQKTVSRD 656
           LQ    T+W +SSS  ++++   QKT+ RD
Sbjct: 602 LQYAAATQWLISSSIDINSQSHPQKTMIRD 631


>At5g17410.1 68418.m02042 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 678

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 567 LQ*PLNTRWTVSSSTHLSNKKENQKTVSRD 656
           LQ    T+W +SSS  ++++   QKT+ RD
Sbjct: 601 LQYAAATQWLISSSIDINSQSHPQKTMIRD 630


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 593 PPGVKWLLEPIDIHNVNAPPTLRYKF*G-HPSNRNALL--LHGRNRQGGGTHPRGLTRG 426
           PPGV +  + +DI ++  PP L ++  G  P + N  +   HG +   G  +P G   G
Sbjct: 798 PPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSG 856


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,636
Number of Sequences: 28952
Number of extensions: 338986
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)