Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0155
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    28   1.7  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   9.3  

>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 463 NPLWQ*ILYSAKTKQIHYLIFIHCIQMNTRFV 558
           +P W   LY+ KTK+I  L F   I+ + +F+
Sbjct: 454 DPNWSNFLYNGKTKKIELLDFGASIEYDEKFI 485


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +3

Query: 543 EYSFRLPINANRSVNEYSLCRLDVLPSHTTM*STGS------HLASRTDRNLVTPPTAVK 704
           E+S+   +N N +V E SL +L  +PS        S       L     R +++ P + K
Sbjct: 54  EFSYSKDVNNNGAVEELSLTQLFEVPSQAAFAKQSSQDISDDELIQHDSRKVISSPYSPK 113

Query: 705 NT 710
            T
Sbjct: 114 QT 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,524
Number of Sequences: 5004
Number of extensions: 67219
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)