Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0154
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    27   3.0  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    26   3.9  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   6.8  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.8  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   6.8  
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    25   6.8  

>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 281 ERLQYVHLLILYFPVHFDDFHERRAYVGAT 192
           E LQ+++ ++   P   D F  R  Y+G T
Sbjct: 183 EELQHIYKILTLTPASLDSFQNRPPYIGIT 212


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 191 RLRRHRHGAHESRRSVQGNTRSTNEH 268
           ++ +H H AHE R+ +   T  TN++
Sbjct: 305 KITKHNHPAHEIRKQLLSCTNQTNQN 330


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 129 SRLYVDAVGKLGRQAQQGTWGGCADIGTALMKVVEVYRE 245
           SRLY   +G L R++++  W G       +  V++V+ E
Sbjct: 67  SRLYNRVIGPLMRESEKNAWNGVIFYMIGVWIVLKVFPE 105


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 170 GATRNMGRLRRHRHGAHESRRSVQGNTRSTNEH 268
           G T +    R+ +  A +++  V GN   TN+H
Sbjct: 803 GTTNSQNEDRKKKIAAQKNKNPVHGNVGLTNQH 835


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 459 AMDKEMKNMQILEEEKTKLDAFCEQSLKNAMTQERRRYGFVLERQC 596
           A+D++ +    L++ K+       Q   N + ++ R+Y F   RQC
Sbjct: 313 AIDRQEQEESDLDDSKSSDAKSVTQGTTNLIVEKLRKYNFEHIRQC 358


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 179 RNMGRLRRHRHGAHESRRSVQGNTRSTNEHIEG 277
           +N+G   + +    E  R VQG + +  E+++G
Sbjct: 479 KNLGNFTKQQEEVREKSRGVQGESAAHLENVDG 511


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 437 ERDQSGFCYG*RNEEYANFGR--RENKTGCVLRTKLKECYD 553
           E+++ G  YG   +EY   G+      T  +L TK+KEC+D
Sbjct: 41  EQNRPGSKYGNLIKEYIKDGKIVPMEITISLLETKMKECHD 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,582
Number of Sequences: 5004
Number of extensions: 48312
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)