Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0154
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 31 1.00
04_04_1226 - 31872413-31873036 29 2.3
05_05_0268 + 23720837-23720914,23722398-23722486,23722669-237228... 29 3.0
11_01_0421 + 3236798-3237144,3237356-3237441,3237741-3237895,323... 28 5.3
09_02_0327 - 7284829-7284889,7284946-7286126 28 7.0
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 28 7.0
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282... 28 7.0
03_06_0288 + 32865414-32867249 28 7.0
01_06_1132 - 34769800-34769955,34770098-34770157,34770259-347703... 28 7.0
10_08_0753 + 20324011-20324113,20324210-20324231,20324344-203244... 27 9.3
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662... 27 9.3
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 27 9.3
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 30.7 bits (66), Expect = 1.00
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -3
Query: 213 PCLCRRNRPMFLVAPACPASPLRPRRDETPPPHHVELLNMPF 88
PC C + +P P P P +P ++ PP +L+ P+
Sbjct: 128 PCHCEKPKPCEKPPPCKPEEPPKPPPEKPPPKPECKLVPYPY 169
>04_04_1226 - 31872413-31873036
Length = 207
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 155 EAGQAGATRNMGRLRRHRHGAHESRRSVQ 241
EA +G+ R GR R+ +G HE SVQ
Sbjct: 16 EASSSGSKRKRGRPRKSEYGMHEKPYSVQ 44
>05_05_0268 +
23720837-23720914,23722398-23722486,23722669-23722807,
23722899-23722973,23723069-23723190,23723287-23723362,
23723786-23723845,23723939-23724091
Length = 263
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 479 LHFFIHSRTHFGHVRFLFPLFLYCRSSLAVALRTQFVL 366
++FF H HF VR +FPL Y ++ A+ +L
Sbjct: 201 VYFFAHVYLHFDQVRTVFPLGFYSMMAVPPAMSAMNLL 238
>11_01_0421 +
3236798-3237144,3237356-3237441,3237741-3237895,
3237971-3238035,3238180-3238363,3238785-3239048,
3239141-3239224,3239727-3239984,3240214-3240472,
3240550-3240755,3240896-3240946,3241041-3241337
Length = 751
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -1
Query: 278 RLQYVHLLIL--YFPVHFDDFH 219
R+ Y LL L YFPVHFD FH
Sbjct: 235 RIPYKALLGLHAYFPVHFDAFH 256
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 180 LVAPACPASPLRPRRDETPPPHHVELLN 97
L P+C +SP P +E PPP+ L +
Sbjct: 81 LDVPSCSSSPSPPSDEENPPPNPPSLFD 108
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -3
Query: 276 PSICSFVDLVFPCTLRRLS*APCLCRRNRPMFLVAPACPASPLRPRRDETPPPHHVELLN 97
PS ++P TL AP + P ++PA PA+P+ + PPP LL
Sbjct: 19 PSPAPSAPPLYP-TLSMADLAPVQIGPSSPSSPMSPASPATPVDAYAN-APPPSEDVLLR 76
Query: 96 MPFQQL 79
+P QL
Sbjct: 77 IPGAQL 82
>06_02_0208 -
13026296-13026654,13027394-13027497,13028109-13028200,
13028418-13028774,13029932-13030109,13030454-13030507,
13030701-13030784,13031521-13031714
Length = 473
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 382 ERNLCCCKNLFCSDCTTFVSFS--RLVSKGTSRST*N 278
+ N+ C KN C DC F RL+++G + S N
Sbjct: 202 QANILCSKNCKCQDCKNFEGSEELRLITQGDNSSDRN 238
>03_06_0288 + 32865414-32867249
Length = 611
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 156 SPLRPRRDETPPPHH 112
SPL P + + PPPHH
Sbjct: 11 SPLLPAKSKNPPPHH 25
>01_06_1132 -
34769800-34769955,34770098-34770157,34770259-34770334,
34770412-34770533,34770634-34770708,34770899-34771025,
34771126-34771214,34773479-34773535,34773584-34773661
Length = 279
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 479 LHFFIHSRTHFGHVRFLFPLFLYCRSSLAVAL 384
++FF H HF V+ +FPL Y ++ AL
Sbjct: 216 IYFFTHMYFHFDQVKSIFPLGFYSILTVPPAL 247
>10_08_0753 +
20324011-20324113,20324210-20324231,20324344-20324400,
20324704-20324785,20324903-20324998,20325265-20325389,
20325484-20325502,20325598-20325744
Length = 216
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 370 CCCKNLFCSDCTTFVSFSRLVSKGTSR 290
CCC +L+C C +++ R + SR
Sbjct: 35 CCCLSLWCGPCVSYMLRKRALYNDMSR 61
>04_04_1225 -
31865556-31865590,31865687-31865734,31866179-31866262,
31866336-31866395,31866589-31866642,31866747-31867710
Length = 414
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 167 AGATRNMGRLRRHRHGAHESRRSVQ 241
+GA R GR R++ +G HE SVQ
Sbjct: 23 SGAKRKRGRPRKYEYGMHELPYSVQ 47
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = -3
Query: 189 PMFLVAPACPASPLR-PRR--DETPPPHHV 109
PM+ PA P P+R P R PPPH V
Sbjct: 294 PMYYYMPAVPMEPMRGPPRFVQNQPPPHPV 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,874
Number of Sequences: 37544
Number of extensions: 335144
Number of successful extensions: 1133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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