Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0154
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10360.1 68417.m01701 expressed protein                             29   2.5  
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    28   4.4  
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    28   4.4  
At1g03350.1 68414.m00314 BSD domain-containing protein contains ...    28   4.4  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    28   5.9  
At5g21430.1 68418.m02535 DNAJ heat shock N-terminal domain-conta...    27   7.8  
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot...    27   7.8  

>At4g10360.1 68417.m01701 expressed protein
          Length = 266

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 488 LHILHFFIHSRTHFGHVRFLFPLFLYCRSSLAVALRTQFVL 366
           L  + FF+H   HF  V+ +FPL  Y   ++  AL    +L
Sbjct: 202 LLFIFFFVHMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLL 242


>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 407 DNKETEEKENERDQSGFCYG*RNEEYANFGRRENKTGCV 523
           D +ET+EK  ERD  G     R E+ +    +E++ GC+
Sbjct: 473 DERETKEKRRERD--GDSEAERAEKRSRISEKESEDGCL 509


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 407 DNKETEEKENERDQSGFCYG*RNEEYANFGRRENKTGCV 523
           D +ET+EK  ERD  G     R E+ +    +E++ GC+
Sbjct: 473 DERETKEKRRERD--GDSEAERAEKRSRISEKESEDGCL 509


>At1g03350.1 68414.m00314 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 470

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 261 MNILKAFYVDLLVPLETNLEKDTKVVQSEQKRFLQQHKLRSES 389
           MN  K+ + + L P ET  E D+     E +   Q+H  +SES
Sbjct: 1   MNFFKSVFTEDLDPPETESESDSPKHSEEHEHPEQEHPEQSES 43


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 192 RPMFLVAPACPASPLRPRRDETPPP 118
           +P  +  PACP +P +P+    PPP
Sbjct: 59  QPKPVPPPACPPTPPKPQPKPAPPP 83


>At5g21430.1 68418.m02535 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile: PF00226
           DnaJ domain;
          Length = 218

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 468 KEMKNMQILEEE-KTKLDAFCEQSLKNAMTQERRRYGFVLER 590
           KE+K   + EE+ KTK+D   E     +  +ERR Y + L R
Sbjct: 120 KELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLAR 161


>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
           similar to SP|P22138 DNA-directed RNA polymerase I 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04563; RNA polymerase beta subunit, PF04560: RNA
           polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
           domain 2, PF04565: RNA polymerase Rpb2 domain 3,
           PF00562: RNA polymerase Rpb2 domain 6
          Length = 1114

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -3

Query: 180 LVAPACPASPLRPRRDETPPPHHVELLNMPFQQLSS 73
           L   +CPA  +RP ++ + P  ++EL+  PF+Q+++
Sbjct: 564 LYLASCPARFIRPVKNISIPSDNIELIG-PFEQVAN 598


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,277
Number of Sequences: 28952
Number of extensions: 260211
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)