Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0152
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    33   0.045
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   2.3  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   5.2  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   5.2  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    25   9.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.1  

>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 33.1 bits (72), Expect = 0.045
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 470 RPFIAAHFHGNTSHLNTEVHEHYKGNGLIR--VSHGAPHDVWYPSQWTISSPPPRP 631
           R +I  H+  +T  +    + H+ GNG I   V HG  H +  P    +S PPP+P
Sbjct: 170 RLYIYNHYRDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAP----LSGPPPQP 221


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 480 INGRLCSSSSLFLTVRG-TVCI-VILAAEADSKLPKNFFDLRLSSNFVAIYGAGNRSTSG 307
           +N  L S SS  L +R  T+C   I     +SKLP+    L L    +     G+R+TSG
Sbjct: 268 VNDPLKSPSSSRLRIRNITLCADKIPRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSG 327


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/72 (20%), Positives = 29/72 (40%)
 Frame = +2

Query: 149 FKKDNELLLSNVRKIKKXXXXXXXXXXXXXXXXXXMTESSVDKRNKRSVFESSPEVDRFP 328
           FK+D +LL+  +  IKK                  + ++   +  +R + E+  E++ + 
Sbjct: 746 FKRDEQLLVEKIEGIKKRILLKRREVNSLESQELSVLDTEKIQTLERRISETEKELESYA 805

Query: 329 APYMATKLEERR 364
                 K EE R
Sbjct: 806 GQLQDAKNEEHR 817


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 494 HGNTSHLNTE--VHEHYKGNGLIRVSHGAPHDVWYPSQWTISS 616
           H NT  ++ +  +H+  +  G+ +++HG  H ++  S  +I S
Sbjct: 318 HANTKQVDDDPVIHDFLQNRGIKQLAHGDHHHLYLTSDHSIWS 360


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 29  DVADDPESGDWYPDFDKRADKVMNSNMVH-LRPDEIADAVAFKKDNELL 172
           + A    S  WY  ++    +V N N+VH L    +   V F  + + L
Sbjct: 280 EAARKTTSQSWYVTYNPACKRVFNINLVHTLEHPSVVCCVKFSNNGKYL 328


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 583 VVGGAVRHSYQAITFVMLMNFGVQMRCVSME 491
           V+G  + + Y+ + F+   +FG  +RC+  E
Sbjct: 690 VLGDHIAYRYEVVDFLGKGSFGQVLRCIDYE 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,466
Number of Sequences: 5004
Number of extensions: 55155
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)