Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0152
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0037 - 7613632-7613727,7614452-7615507 33 0.19
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 4.1
02_05_0815 - 31977721-31977813,31978078-31978482,31978843-31979349 29 5.4
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 29 5.4
01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485 29 5.4
10_07_0137 + 13318208-13318225,13318458-13318748,13319295-13319438 28 7.2
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975... 28 7.2
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 28 7.2
09_02_0417 - 8915604-8916779,8916863-8917270 28 9.5
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 527 HEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTHSGH 652
H H+K G + V+ G P+ Y + + PPP P H H
Sbjct: 224 HHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHH 265
>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 592 IPHVVGGAVRHSYQAITFVMLMNFGVQMRCV-SMEMSCYKRPPLFLIVTVPDCPRYGVHR 416
IPHV+ R YQ + +++ G ++ CV S+ + K L I T D R G+ R
Sbjct: 1198 IPHVLSNFARLDYQGF-YTVILEKGDEILCVASIRVHGTKAAELPFIATSVDYRRQGMCR 1256
Query: 415 HL 410
L
Sbjct: 1257 RL 1258
>02_05_0815 - 31977721-31977813,31978078-31978482,31978843-31979349
Length = 334
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 569 GAPHDVWYPSQWTISSPPPRPTLTHSG 649
GA + W Q+ +SSPP PT SG
Sbjct: 81 GAVEEFWDERQYPVSSPPAAPTPAASG 107
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 353 EERRKSKKFLGSLESASAAKMTMHTVPRTVRNSDDEEQRR 472
EE+RKS + + K + H + + RN DEE+R+
Sbjct: 125 EEKRKSSDDMRDGDDEEKKKRSRHDMKKNSRNDADEEKRK 164
>01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485
Length = 283
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +2
Query: 443 RNSDDEEQRRPFIAAHFHGNTSHLNTEVHEHYKGNGLIRVSHGAPHDVWYPSQWTISSPP 622
R + +RRPF+ F ++SH E + +G + + A + + +++PP
Sbjct: 178 RQQQNTARRRPFMMLSFDSSSSHQLHEQPHAFPPDGQLPATAAAASPSSFTAAEALAAPP 237
Query: 623 PRPTLTHSG 649
T+ G
Sbjct: 238 LTTTMNDGG 246
>10_07_0137 + 13318208-13318225,13318458-13318748,13319295-13319438
Length = 150
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +2
Query: 347 KLEERRKSKKFLGSLESASAAKMTMHTVPRTVRNSDD--EEQRRPFIAAHFHGNTSHLNT 520
K +R S+ LG + AA+ P+ N+ ++ RRP AAH T +
Sbjct: 49 KQNKRELSRASLGGDDDLLAAQQHKAAAPQPAPNASAAADDHRRPLHAAHDDSPTEQCSD 108
Query: 521 EVHEHYKGNG 550
H+ G G
Sbjct: 109 LRHDDRHGKG 118
>02_02_0491 -
10896463-10897172,10897246-10897353,10897457-10897558,
10897674-10897772,10898995-10899093,10900622-10900943
Length = 479
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +2
Query: 395 SASAAKMTMHTVPRTVRNSDDEEQRRPFIAAHFHG-NTSHLNTEVHEHYKGNGLIRVSHG 571
+A A + + P T S+ E++ ++ T++ T + + G+G + G
Sbjct: 50 TARAPRSLLARFPTTKMTSELEKEAGRYVDDSSQAARTNNKITNLQVSFVGHGHDTPADG 109
Query: 572 APH--DVWYPSQWTISSPPPRPTLTHSGHVP 658
D YP++W P P+L + H+P
Sbjct: 110 EGQFADAAYPAKWKPDQDPSTPSLVVAHHLP 140
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 470 RPFI-AAHFHGNTSHLNTEVHEHYKGNGLIRVSHGAPHDVW 589
R F+ AH H + S NT V+E KG G++ V+ VW
Sbjct: 452 RSFVMGAHTHHSRS--NTNVYEGRKGKGMVEVTISRGRVVW 490
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 281 NKRSVFESSPEVDRFPAPYMATKLEERRKSKKFLGSLESASAAKMTMHTVPRTVRNSD 454
N+R+ E+ P + P A K +RK K S E K MH +T+ N+D
Sbjct: 398 NERATRENIPRKETQPRICKAPKFSRKRKGKASSSSCEVQEDIKHAMHL--QTMLNND 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,511,126
Number of Sequences: 37544
Number of extensions: 396039
Number of successful extensions: 1358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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