Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0152
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31825| Best HMM Match : TNF (HMM E-Value=5.3e-08) 33 0.26
SB_43487| Best HMM Match : K-box (HMM E-Value=0.79) 30 1.8
SB_5507| Best HMM Match : TP2 (HMM E-Value=4) 30 1.8
SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39) 29 3.2
SB_59127| Best HMM Match : ATP-synt_F6 (HMM E-Value=2.7) 29 3.2
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_6864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_50003| Best HMM Match : PAN (HMM E-Value=0.044) 28 7.3
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44) 28 7.3
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 28 9.6
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.6
SB_18113| Best HMM Match : THAP (HMM E-Value=0.00058) 28 9.6
SB_53426| Best HMM Match : THAP (HMM E-Value=0.00058) 28 9.6
SB_27009| Best HMM Match : THAP (HMM E-Value=0.00052) 28 9.6
SB_25623| Best HMM Match : THAP (HMM E-Value=0.00058) 28 9.6
SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2) 28 9.6
>SB_31825| Best HMM Match : TNF (HMM E-Value=5.3e-08)
Length = 371
Score = 33.1 bits (72), Expect = 0.26
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 660 VHHTGVYLVYAQIYYLD 710
+HH GVY VYAQ++Y D
Sbjct: 157 IHHPGVYFVYAQLFYTD 173
>SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)
Length = 243
Score = 30.3 bits (65), Expect = 1.8
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Frame = +2
Query: 26 LDVADDPESGDWYPDFDK-RADKVMNSNMVHLRPDEIADAVA-FKKDNELLLSNVRKIKK 199
L+ AD+ ES +W +DK A+K H R E A +A +++N+ L ++R ++
Sbjct: 72 LEKADESESRNWVIRYDKLLAEKKALETQFHQREKEFAQEIASLQEENKELKHSLRLERE 131
Query: 200 XXXXXXXXXXXXXXXXXXMTESSVDKRNKRSVFESSPEVDRFPAPYMATKLEERRKSKK 376
V KR K +++ E+D+ + +LEE K+K+
Sbjct: 132 ALSLEYDHANFDKLQKLIDELEDVVKRKKEAIY--GMELDKLQE--LIDQLEEAVKTKE 186
>SB_5507| Best HMM Match : TP2 (HMM E-Value=4)
Length = 524
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 392 ESASAAKMTMHTVPRTVRNSDDEEQRRPFIAAHFHGNTSHLNTEVH 529
+SA A HT + R+ D R +++A HG + HL+T VH
Sbjct: 291 DSAHKATAGGHTADQGARSGDSAS--RSWVSAVIHGVSRHLDTRVH 334
>SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39)
Length = 252
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 11 DDEDMLDVADDPESGDWYPDFDKRADKVMNSNMVHLRPDEIADAVAFKKDNE 166
D + D DD + D PD+ V NS+ D I DA +DN+
Sbjct: 156 DGDGRGDACDDDDDNDGIPDYRDNCRLVPNSDQRDTDLDGIGDACQCDQDND 207
>SB_59127| Best HMM Match : ATP-synt_F6 (HMM E-Value=2.7)
Length = 479
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 566 HGAPHDVWYPSQWTISSPPPRPTL 637
H P+ +WY + S+PPP TL
Sbjct: 147 HSQPYRIWYSLEVQASAPPPEKTL 170
>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1322
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 154 EGQRAAPLEREENQETAKRESRKSRFAATPT 246
EG+R AP E+ ET+K+ + K A PT
Sbjct: 657 EGKRVAPPSDSESSETSKKPANKKASKALPT 687
>SB_6864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -3
Query: 471 RLCSSSSLFLTVRGTVCIVILAAEADSKLPKNFFDLRLSSNFVAIYGAGNRSTSGLDSK 295
R C+ V G+ C+ +L L K+FFD + + FVA G+ NR +G D +
Sbjct: 28 RFCAILFKIAGVIGSFCVAVLPFALIIPLRKSFFDAWIKA-FVA--GSENRIANGADEQ 83
>SB_50003| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 286
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = -1
Query: 404 LKRTLSCPRTFSIYVFLLISWPYMELEIDLLQGLIRKRYVCSVYPLKIRSCPAVGVAAN 228
LKR+ + +TFS+ F Y+ + L++K+ +C V LK +SC A+ VA++
Sbjct: 195 LKRSPTI-KTFSLGRFKEHKGSYLNVPA-FSTSLVKKKTMCQVKCLKEKSCVAMNVASS 251
>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
Length = 788
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 68 DFDKRADKVMNSNMVHLRPDEIADAVAFKKDNELLLSN 181
D+ + + +M + LR D +DA +FK++ ELL S+
Sbjct: 424 DYKDKYEGLMAEKLQELREDYDSDARSFKEETELLYSS 461
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 341 PYMELEIDL-LQGLIRKRYVCSVYPLKIRSCPAVGVAANRDFLDSRL 204
PY+ ++ L GL R+ C+ Y S +A NRDF DS +
Sbjct: 2745 PYLVVKARLPFDGLSRQENWCADYQKLCESLKLRPLACNRDFFDSEI 2791
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 542 GNGLIRVSHGAPHDVWYPSQWTISSP 619
GNG +++S G P QWT+S+P
Sbjct: 3497 GNGGVQISQGNPMTYGAGIQWTLSNP 3522
>SB_18113| Best HMM Match : THAP (HMM E-Value=0.00058)
Length = 142
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +2
Query: 380 LGSLESASAAKMTMHTVPRTVRNSDDE------EQRRPFIAAHFHGNT 505
+G + ++++ HT+P+ V N +E E+RR +I+A G+T
Sbjct: 7 VGCASKSGKSRVSFHTIPKIVSNQGEEHEELTRERRRRWISAISRGDT 54
>SB_53426| Best HMM Match : THAP (HMM E-Value=0.00058)
Length = 531
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +2
Query: 380 LGSLESASAAKMTMHTVPRTVRNSDDE------EQRRPFIAAHFHGNT 505
+G + ++++ HT+P+ V N +E E+RR +I+A G+T
Sbjct: 7 VGCASKSGKSRVSFHTIPKIVSNQGEEHEELTRERRRRWISAISRGDT 54
>SB_27009| Best HMM Match : THAP (HMM E-Value=0.00052)
Length = 197
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +2
Query: 380 LGSLESASAAKMTMHTVPRTVRNSDDE------EQRRPFIAAHFHGNT 505
+G + ++++ HT+P+ V N +E E+RR +I+A G+T
Sbjct: 7 VGCASKSGKSRVSFHTIPKIVSNQGEEHEELTRERRRRWISAISRGDT 54
>SB_25623| Best HMM Match : THAP (HMM E-Value=0.00058)
Length = 538
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +2
Query: 380 LGSLESASAAKMTMHTVPRTVRNSDDE------EQRRPFIAAHFHGNT 505
+G + ++++ HT+P+ V N +E E+RR +I+A G+T
Sbjct: 7 VGCASKSGKSRVSFHTIPKIVSNQGEEHEELTRERRRRWISAISRGDT 54
>SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2)
Length = 116
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 59 WYPDFDKRADKVMNSNMVHLRPDEIADAVA 148
W PD D+VMNSN + I + +A
Sbjct: 11 WMPDIQTAIDRVMNSNFAFISDRPILEYIA 40
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,236,745
Number of Sequences: 59808
Number of extensions: 434036
Number of successful extensions: 1580
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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