Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0148
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 298 3e-81
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 296 1e-80
03_05_0641 - 26341903-26342199,26342292-26342378 29 3.7
03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770 29 3.7
02_02_0378 + 9561775-9562947 29 3.7
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 28 6.5
11_06_0463 + 23879587-23879771,23879783-23881658 28 6.5
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 298 bits (731), Expect = 3e-81
Identities = 146/246 (59%), Positives = 182/246 (73%), Gaps = 7/246 (2%)
Frame = +1
Query: 7 IGIEFMFINSLEQCNWIRQRMEPPNVTKMNADQKRLILARLTRSTGFENFLAKKWSSEKR 186
IG E+M I ++CNW+R ++E + + N D++ ++L RL ST FENFLA KW++ KR
Sbjct: 190 IGYEYMHIPDRDKCNWLRDKIETAKLKEYNKDRRLVMLDRLIWSTQFENFLATKWATAKR 249
Query: 187 FGLEGCEILIPAMKQVIDVSTKLGVESIIMGMPHRGRLNVLANVCRKPLHQLFTQFAG-- 360
FGLEG E LIP MK++ D + LGVE+I++GMPHRGRLNVL NV RKPL Q+F++F G
Sbjct: 250 FGLEGGETLIPGMKEMFDRAADLGVENIVIGMPHRGRLNVLGNVVRKPLSQIFSEFTGGT 309
Query: 361 --LEAED---DGSGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAE 525
+E ED G+GDVKYHLGT +R R K I L++ ANPSHLEAVDPVV GKTRA+
Sbjct: 310 RPVEGEDGLYTGTGDVKYHLGTSYDRPTR-GGKRIHLSLVANPSHLEAVDPVVIGKTRAK 368
Query: 526 QFYRGDNEGKKVMSILLHGDAAFAGQGVVFETMHLSDLPAYTTHGTIHIVANNQIGFTTD 705
QFY D + K M IL+HGD +FAGQGVV+ET+HLS LP+YTT GTIHIV NNQ+ FTTD
Sbjct: 369 QFYSNDLDRTKNMGILIHGDGSFAGQGVVYETLHLSALPSYTTGGTIHIVVNNQVAFTTD 428
Query: 706 PRHSRS 723
PR RS
Sbjct: 429 PRAGRS 434
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 296 bits (726), Expect = 1e-80
Identities = 144/246 (58%), Positives = 184/246 (74%), Gaps = 7/246 (2%)
Frame = +1
Query: 7 IGIEFMFINSLEQCNWIRQRMEPPNVTKMNADQKRLILARLTRSTGFENFLAKKWSSEKR 186
IG E+M I E+CNW+R R+E N + + D+++++L RL ST FE+FLA+KW++ KR
Sbjct: 197 IGYEYMHIPDREKCNWLRDRIETVNAREYSYDRRQVMLDRLMWSTQFESFLAQKWTTAKR 256
Query: 187 FGLEGCEILIPAMKQVIDVSTKLGVESIIMGMPHRGRLNVLANVCRKPLHQLFTQFAG-- 360
FGLEG E LIP MK++ D + LGVESI++GMPHRGRLNVL NV RKPL Q+F++F+G
Sbjct: 257 FGLEGAETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGT 316
Query: 361 LEAED-----DGSGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAE 525
AE+ G+GDVKYHLGT +R R K+I L++ ANPSHLEAVDPVV GKTRA+
Sbjct: 317 KPAEEGEGLYTGTGDVKYHLGTSYDRPTR-GGKHIHLSLVANPSHLEAVDPVVAGKTRAK 375
Query: 526 QFYRGDNEGKKVMSILLHGDAAFAGQGVVFETMHLSDLPAYTTHGTIHIVANNQIGFTTD 705
Q+Y D + K + +LLHGD +F+GQGVV+ET+HLS LP YTT GTIHIV NNQ+ FTTD
Sbjct: 376 QYYSNDLDRTKNLGVLLHGDGSFSGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTD 435
Query: 706 PRHSRS 723
PR RS
Sbjct: 436 PRAGRS 441
>03_05_0641 - 26341903-26342199,26342292-26342378
Length = 127
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 463 CANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKVMSILLHGDAAFAGQG 606
C + H EAV + + ++ +GD+ +K +L HGD A A G
Sbjct: 51 CRSCGHCEAVQVPITPQQLQKKRGQGDDRRRKKKQLLGHGDRAAAAGG 98
>03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770
Length = 219
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 480 VRGVRANSQSNVLVGNAIQTLDVRAQVIFHVAGTIILSFETGELCEQLVQRLTAHVREYV 301
+R A S NV +G I DV F + T+I + LC + + AH+++++
Sbjct: 66 LREFAAPSADNVAIGPQINMGDVD----FDLKSTLITMAQASPLCGKPNENANAHLQQFL 121
Query: 300 EAPSM 286
E SM
Sbjct: 122 EICSM 126
>02_02_0378 + 9561775-9562947
Length = 390
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Frame = +2
Query: 134 DQLGSRISSLRNGPPRSVSVWKGAXXXXXXXXXXXTFPRNSESNPSLWACPIEGASTY-- 307
DQL + + G P S SVW+ +PR+ + + + G S Y
Sbjct: 279 DQLDAAVDGAGGGDPPSPSVWEKMDGATGDHVLFLGYPRSFAVEAARYGGEVPGGSAYFV 338
Query: 308 --SRTCAVSLCT 337
S+ C V C+
Sbjct: 339 GRSKPCRVYRCS 350
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -2
Query: 360 TGELCEQLVQRLTAHVREYVEAPSMGHAHN---DGFDS 256
TGELC L + L AH++E PS D +DS
Sbjct: 380 TGELCANLCRNLGAHLKEQDGHPSFSELRKVLLDNYDS 417
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 623 IVSNTTP*PANAASPCSRIDITFLPSLSPL*NCSALVLPCTTGSTASKCEGFAQTANLM 447
+V TP P AA PSLSP +CS + + +G + EG+ +T +M
Sbjct: 299 VVDAFTPEPPTAAEKSGDAS----PSLSPSPSCSTVAVSEASGHHVLRIEGYKRTKMMM 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,318,609
Number of Sequences: 37544
Number of extensions: 463879
Number of successful extensions: 1432
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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