Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0148
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07) 324 4e-89
SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40) 209 2e-54
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1) 51 1e-06
SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7) 30 2.2
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 3.8
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
Length = 406
Score = 324 bits (796), Expect = 4e-89
Identities = 159/246 (64%), Positives = 188/246 (76%), Gaps = 18/246 (7%)
Frame = +1
Query: 4 NIGIEFMFINSLEQCNWIRQRMEPPNVTKMNADQKRLILARLTRSTGFENFLAKKWSSEK 183
++G++FMFI +C+WIR++ E P + D+KR +LARL RSTGFE FLA+KWSSEK
Sbjct: 161 HVGLDFMFIPEKYKCDWIRKKFEMPGHDVLTRDEKRTLLARLVRSTGFEGFLARKWSSEK 220
Query: 184 RFGLEGCEILIPAMKQVIDVSTKLGVESIIMGMPHRGRLNVLANVCRKPLHQLFTQF-AG 360
RFGLEGC++L+PAMK +ID S++LGVES++MGMPHRGRL+VLANVCRKPL Q+FTQF
Sbjct: 221 RFGLEGCDVLVPAMKAIIDKSSELGVESVVMGMPHRGRLDVLANVCRKPLEQIFTQFDPT 280
Query: 361 LEAEDDGSGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQ----------- 507
LE D+GSGDVKYHLG +RLNR TNK I+LAV ANPSHLE V
Sbjct: 281 LEPSDEGSGDVKYHLGMSHQRLNRGTNKIIQLAVVANPSHLEGDKTTVALPNLLKSLFNF 340
Query: 508 ------GKTRAEQFYRGDNEGKKVMSILLHGDAAFAGQGVVFETMHLSDLPAYTTHGTIH 669
GKT+AEQFYRGD GK+VMSILLHGDAAF+GQGVV+ET HLS LP YTTHGTIH
Sbjct: 341 REVSQGGKTKAEQFYRGDARGKEVMSILLHGDAAFSGQGVVYETFHLSALPHYTTHGTIH 400
Query: 670 IVANNQ 687
IV NNQ
Sbjct: 401 IVVNNQ 406
>SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)
Length = 382
Score = 209 bits (510), Expect = 2e-54
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 3/237 (1%)
Frame = +1
Query: 22 MFINSLEQCNWIRQRMEP-PNVTKMNADQKRLILARLTRSTGFENFLAKKWSSEKRFGLE 198
M+I + WI+ R++ N + + D+K+ IL +L + FE FL K+ +KRF LE
Sbjct: 1 MYIRDPKVQEWIKNRLDVNDNQPQFSTDKKKNILKKLNEAVSFETFLHTKYVGQKRFSLE 60
Query: 199 GCEILIPAMKQVIDVSTKLGVESIIMGMPHRGRLNVLANVCRKPLHQLFTQFAGLEAEDD 378
GCE IPA+ +I+ + + GVE +MGM HRGRLNVLAN+ K +F++F G + +DD
Sbjct: 61 GCESAIPALDALIEGAAERGVEQFVMGMAHRGRLNVLANIFGKNTQNIFSEFDGKDYDDD 120
Query: 379 G--SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEG 552
GDVKYHLG +R + K I L + NPSHLE V V++G RA+Q N+
Sbjct: 121 MYFDGDVKYHLGLTSDRTT-TSGKKINLNLAPNPSHLETVGAVIEGIARAKQDRNYPNDF 179
Query: 553 KKVMSILLHGDAAFAGQGVVFETMHLSDLPAYTTHGTIHIVANNQIGFTTDPRHSRS 723
KV+ I +HGDAA AGQG+V+E + ++ L Y T GTIH+V NNQ+GFTT+ +RS
Sbjct: 180 SKVLPIAVHGDAAIAGQGIVYEIIQMAKLDGYKTGGTIHLVINNQVGFTTNYLDARS 236
>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
Length = 311
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Frame = +1
Query: 382 SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQF------YRGD 543
+GDV HL + ++ L+ + + + NPSHLEA +PVV GK R Q Y D
Sbjct: 152 TGDVLSHLTSSVD-LDYGGQDPLHVTMLPNPSHLEACNPVVAGKARGRQMTLKEGDYSID 210
Query: 544 NE----GKKVMSILLHGDAAFAGQ 603
++ G KV +L+HGDA+FA Q
Sbjct: 211 DKDARIGDKVTCLLVHGDASFADQ 234
>SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = -2
Query: 438 GNAIQTLDVRAQVIFHVAGTIILSFETGELCEQLVQRLTAHVREYVEAPSMGHAHNDGFD 259
G T+ V V F + L E G C + L H + P H++ D
Sbjct: 83 GAVFDTISVGPSVAFWMRA---LHRENG-YCHHTLDTLVNHTTVTNQFPCCVHSNRSCRD 138
Query: 258 SEFRGNVDDLLHRRNQNFAPFQTET-LLGGPFLS 160
SE VD RR +FAPF TET +L P +S
Sbjct: 139 SENMKAVD--WFRRLIDFAPFPTETWILDSPRIS 170
>SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
Length = 810
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 272 MMDSTPSFVETSMTCFIAGIKISHPSKPKRFSEDHFLARKFSNP 141
++ STPS V + K S P KPKRF +D + S+P
Sbjct: 133 LLSSTPSDVSNKDAAKVR--KSSRPPKPKRFGDDDGMDTNLSSP 174
>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1565
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 388 DVKYHLGTYIERLNRVTNKNIRLAV-CANPSHLEAVDPVVQ----GKTRAEQFY 534
D + H GT +ERL V +N+ V A P+ + +P +Q KT A +Y
Sbjct: 1381 DQRPHFGTLVERLGNVLERNVAKVVNVAKPAIVAKDNPYLQLLADDKTGATDYY 1434
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 498 GVDGLQVRGVRANSQSNVLVGNAIQTLDVRAQVIFHVAGTIILSFETGELCEQLVQRLTA 319
G L+ G N N + A+Q L+ ++H+ G + S T + EQ QR T
Sbjct: 316 GYRALKDDGHPKNVNKNPVAEKAVQELEHELLQLYHLGGPV--SKNTTLIGEQHSQRKTY 373
Query: 318 HVR-EYVEAPSMGH 280
H E +AP+ G+
Sbjct: 374 HPHIEKSKAPTTGY 387
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,804,883
Number of Sequences: 59808
Number of extensions: 510131
Number of successful extensions: 1416
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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