Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0147
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   2.5  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   5.7  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   7.5  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 361  RFNILATQFGDRFNLL*MFIASNYVLISMPNKSNFTRHTYIPNKDTSSY*KKQNIT 194
            R + L  +   + NL   F    YV+   PN  N   ++Y    D SS  KKQN T
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFSTDTYVIFFEPNTENVYINSYNLWVDQSSQSKKQNRT 1117


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 113 LIRFSQKYPMIRYFLAVHKFSLNN*KFCDILFF 211
           LI +SQ+  ++ +F    KFS+N+ KFC +  F
Sbjct: 31  LILYSQE--ILSFFFMCSKFSMNSLKFCVLFSF 61


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +1

Query: 592  NLVIYIF--KLSINFWTILVYGMALK---NSLETRVW 687
            N+VI+ F  ++ IN+W  + YG A +   N+  T +W
Sbjct: 2142 NIVIWFFISQILINYWLAVPYGQAWRFFWNTSNTPLW 2178


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 162 TARKYLIIGYF*ENLISYVCANFVPV 85
           T +KY I+GYF   L+  V A FV V
Sbjct: 48  TNKKYYILGYFLVPLLLTVIAGFVRV 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,702
Number of Sequences: 5004
Number of extensions: 71751
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)