Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0147
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0842 + 25307509-25308049,25308507-25308659,25308770-253089...    29   3.4  
04_03_0769 - 19409688-19409843,19409930-19410199,19410372-194104...    29   6.0  
02_01_0681 - 5059082-5059217,5059318-5059783,5059869-5060072,506...    29   6.0  

>06_03_0842 +
           25307509-25308049,25308507-25308659,25308770-25308973,
           25309056-25309521,25309614-25309746
          Length = 498

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -2

Query: 606 IYY*VENDLSISGTANRSVCYRNLLEGYFMAQNAFSYPIFILTNQLF 466
           +Y  +  D+ +SGT++  V +R +LEG+F A    S  I +L   LF
Sbjct: 175 VYMIIIGDV-LSGTSSTGVHHRGILEGWFGAHLWNSRAIVLLATTLF 220


>04_03_0769 -
           19409688-19409843,19409930-19410199,19410372-19410460,
           19410539-19410602,19410679-19410722,19410938-19411012,
           19411760-19411802,19411913-19411982,19412260-19412279
          Length = 276

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 326 SVSKLSCQYVKPWDHLTDNMTA*VEQTA*FQDTP-ILNSKKFLES 457
           S SKL  +YV+PWD+   +    +     +   P ILN ++F ES
Sbjct: 72  SASKLPKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGES 116


>02_01_0681 -
           5059082-5059217,5059318-5059783,5059869-5060072,
           5060163-5060315,5060849-5061269
          Length = 459

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 606 IYY*VENDLSISGTANRSVCYRNLLEGYFMAQNAFSYPIFILTNQLF 466
           +Y  +  D+ +SGT+   V +R + EG+F      S P+ +L   LF
Sbjct: 135 VYMIIVGDV-LSGTSTSGVHHRGIFEGWFGPHLWNSRPVVLLATTLF 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,204,167
Number of Sequences: 37544
Number of extensions: 362456
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)