Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0145
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05350.1 68415.m00563 hypothetical protein                          29   2.6  
At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00...    29   3.4  
At4g33330.1 68417.m04740 glycogenin glucosyltransferase (glycoge...    28   6.0  
At2g26600.1 68415.m03191 glycosyl hydrolase family 17 protein          28   7.9  

>At2g05350.1 68415.m00563 hypothetical protein
          Length = 453

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = +1

Query: 52  LVDHIVSVIIESLPSKACTLFFFSGSIWPVHIILYVESLLKLMVIVSNS 198
           + +H + V++E+     C ++ F     P+HI+   ESL++++ +  N+
Sbjct: 406 MTEHSLDVVLEA-KQDICRIYGFDPQSSPMHIVSQGESLIRMVFLSHNN 453


>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 338

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 319 ILTIIECKNVSILYLYSNTMQKTNIWFCIRKYTCSTFKRCLFLIQ*INCVMFFEHLY 489
           +L+ +  + +S+LY +S    K  IW      T +T    L L    NCV  F  LY
Sbjct: 248 VLSFVREEQLSVLY-WSRATPKMEIWITNNIDTDATLLWRLHLDTRFNCVRIFSSLY 303


>At4g33330.1 68417.m04740 glycogenin glucosyltransferase
           (glycogenin)-related similar to glycogenin
           glucosyltransferase (glycogenin-1) (EC 2.4.1.186) from
           Homo sapiens [SP|P46976], Mus musculus [SP|Q9R062],
           Oryctolagus cuniculus [GI:165513]; contains Pfam profile
           PF01501: Glycosyl transferase family 8
          Length = 593

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 618 MQMNIKIETSKTALIRFLFSVITFSFSWCTNVYW 517
           M M +K+  SK+ALIRF   ++ FSF   T +++
Sbjct: 1   MTMIMKMAPSKSALIRFNLVLLGFSFLLYTAIFF 34


>At2g26600.1 68415.m03191 glycosyl hydrolase family 17 protein
          Length = 388

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 108 FVFFFWINLASTYYIVRRIFIEAYGYCFKFVLKTLVSKQSM 230
           F FFF+ NL S  Y V   F+  YG  +  +   + S + +
Sbjct: 11  FFFFFFFNLTSLEYQVDGAFVGTYGINYGRIADNIPSPEKV 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,453
Number of Sequences: 28952
Number of extensions: 273969
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)