Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0143
(361 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 40 5e-04
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 38 0.002
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 38 0.003
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 37 0.005
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 36 0.006
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 36 0.006
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 36 0.006
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 36 0.011
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 35 0.014
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 35 0.014
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 35 0.014
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 35 0.014
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 35 0.014
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 35 0.014
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 35 0.019
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 35 0.019
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 35 0.019
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 35 0.019
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 34 0.025
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 34 0.025
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 34 0.025
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 34 0.025
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 34 0.025
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 34 0.033
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 34 0.033
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 34 0.033
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 34 0.033
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 34 0.033
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 34 0.033
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 33 0.043
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 33 0.043
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 33 0.043
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 33 0.043
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 33 0.043
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 33 0.043
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 33 0.043
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 33 0.043
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 33 0.043
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 33 0.057
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 33 0.057
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 33 0.057
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 33 0.075
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 33 0.075
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 33 0.075
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 33 0.075
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 33 0.075
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 33 0.075
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 33 0.075
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 33 0.075
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 32 0.100
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 32 0.100
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 32 0.100
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 32 0.100
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 32 0.13
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 32 0.13
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 32 0.13
At1g15850.1 68414.m01902 transducin family protein / WD-40 repea... 32 0.13
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 32 0.13
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 31 0.17
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 31 0.17
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 31 0.23
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 31 0.23
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 31 0.23
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 31 0.23
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 31 0.23
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 31 0.23
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 31 0.23
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 31 0.23
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 31 0.23
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 31 0.30
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 31 0.30
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 31 0.30
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 31 0.30
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 31 0.30
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 30 0.40
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 30 0.40
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 0.40
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 30 0.40
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 30 0.40
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 30 0.40
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 30 0.40
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 30 0.40
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 30 0.53
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 30 0.53
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 30 0.53
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 30 0.53
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 30 0.53
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 29 0.70
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 29 0.70
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 29 0.70
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 29 0.70
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 29 0.70
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 29 0.70
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 0.70
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 0.70
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 29 0.93
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 0.93
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 29 0.93
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 29 0.93
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 29 0.93
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 29 1.2
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 29 1.2
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 29 1.2
At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A... 29 1.2
At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A... 29 1.2
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 28 1.6
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 28 1.6
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 28 1.6
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 28 1.6
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 28 1.6
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 28 1.6
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 28 1.6
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 28 2.1
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 28 2.1
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 28 2.1
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 28 2.1
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 28 2.1
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 28 2.1
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 27 2.8
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 27 2.8
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 27 2.8
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 27 2.8
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 2.8
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 27 2.8
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 27 3.8
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 27 3.8
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 27 3.8
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 27 5.0
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 27 5.0
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 27 5.0
At5g26270.1 68418.m03135 expressed protein ; expression support... 26 6.6
At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing ... 26 6.6
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 26 6.6
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 26 6.6
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 26 6.6
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ... 26 8.7
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 26 8.7
At1g74770.1 68414.m08663 expressed protein 26 8.7
At1g61680.1 68414.m06957 terpene synthase/cyclase family protein... 26 8.7
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 39.9 bits (89), Expect = 5e-04
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 329 SGVLRQWNMLTVAQN-A*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
SGV + W M V A L H D+ F + L TAS DRT K+WK
Sbjct: 276 SGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWK 326
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L H+ + + S+ + T S DRT+K+W
Sbjct: 504 LAGHESKVASLDITADSSCIATVSHDRTIKLW 535
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
++AH+G I F+ S TL T +DR VK+W +L
Sbjct: 227 IHAHEGGCGSIVFEYNSGTLFTGGQDRAVKMWDTNSGTL 265
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 356 NSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
NS++ + G + W + A + H G ++ + F + + T+ ++R +K+W L
Sbjct: 251 NSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSGKERKIKIWDL 310
Query: 176 TQ-ASLRSICSF 144
+ +++I SF
Sbjct: 311 RKFEEVQTIHSF 322
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 36.7 bits (81), Expect = 0.005
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSI 153
W++ T HDG +N + F+++S+ +++A DR+++VW S+ +
Sbjct: 87 WDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCRSHSVEPV 139
Score = 33.1 bits (72), Expect = 0.057
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -3
Query: 356 NSLLXIXEGS--GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
NS + GS G++ W+++ + AHD + + + + +LT+S D T++VW
Sbjct: 238 NSDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGTIRVW 297
Query: 182 K 180
K
Sbjct: 298 K 298
Score = 30.3 bits (65), Expect = 0.40
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L H+G++ F+ N LT +DRT+++W
Sbjct: 14 LKGHEGAVLAARFNGDGNYALTCGKDRTIRLW 45
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 335 EGSGVLRQW--NMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
+ G L+ W NM V N AH SI D+ F + + S+D TVKVW T+
Sbjct: 184 DDGGTLKYWQNNMNNVKANK--TAHKESIRDLSFCKTDLKFCSCSDDTTVKVWDFTK 238
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 275 NAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
NAHD S+ D+ + L + S D T K W
Sbjct: 393 NAHDNSVWDLAWHPIGYLLCSGSNDHTTKFW 423
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -3
Query: 329 SGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
SG WN + L AHD I + + N +++ + T+K W+
Sbjct: 144 SGEFTLWNGQSFNFEMILQAHDQPIRSMVWSHNENYMVSGDDGGTLKYWQ 193
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTL--LTASEDRTVKVW 183
++AH G++ND+ F + + L +T ED+T+KVW
Sbjct: 460 IDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVW 493
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTL--LTASEDRTVKVW 183
++AH G++ND+ F + + L +T ED+T+KVW
Sbjct: 460 IDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVW 493
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 35.5 bits (78), Expect = 0.011
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
LN H+G +N + F+ + L++ S+DR + +W S
Sbjct: 51 LNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSGS 88
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSI 153
L AH+G I A+ L TAS D+TVK+W + L +
Sbjct: 207 LQAHNGHILKCLLSPANKYLATASSDKTVKIWNVDGFKLEKV 248
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -3
Query: 356 NSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
N L ++ WN+ L H + D F L+TAS D T ++W +
Sbjct: 223 NKYLATASSDKTVKIWNVDGFKLEKVLTGHQRWVWDCVFSVDGEFLVTASSDMTARLWSM 282
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 275 NAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
++H ++ + F + + + SED TVK+W L
Sbjct: 75 DSHTNNVMAVGFQCDAKWMYSGSEDGTVKIWDL 107
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
WNM T+ + H I D+ F S L T+S D+T+K+W
Sbjct: 535 WNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIW 577
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
WNM T+ + H I D+ F S L T+S D+T+K+W
Sbjct: 537 WNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIW 579
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
WNM T+ + H I D+ F S L T+S D+T+K+W
Sbjct: 537 WNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIW 579
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
WNM T+ + H I D+ F S L T+S D+T+K+W
Sbjct: 537 WNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIW 579
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
WNM T+ + H I D+ F S L T+S D+T+K+W
Sbjct: 537 WNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIW 579
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 34.7 bits (76), Expect = 0.019
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 278 LNAHDGSINDIYFD-EASNTLLTASEDRTVKVWKLT 174
+N HD + + ++ A N L T S+DRTVK+W L+
Sbjct: 365 INGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLS 400
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 34.7 bits (76), Expect = 0.019
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
H+ I+D+ F + +++AS+D+T+K+W + SL
Sbjct: 70 HENGISDVAFSSDARFIVSASDDKTLKLWDVETGSL 105
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 34.7 bits (76), Expect = 0.019
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -3
Query: 290 QNA*LNAHDGSINDIYFDEASNTL--LTASEDRTVKVW 183
Q+ ++AH G +NDI F + L +T +D+T+KVW
Sbjct: 454 QHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVW 491
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 34.7 bits (76), Expect = 0.019
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -3
Query: 290 QNA*LNAHDGSINDIYFDEASNTL--LTASEDRTVKVW 183
Q+ ++AH G +NDI F + L +T +D+T+KVW
Sbjct: 454 QHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVW 491
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 34.3 bits (75), Expect = 0.025
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 323 VLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
V R W++ T Q L+ HD ++ ++ ++T S D T+K W L
Sbjct: 283 VCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDL 331
Score = 33.1 bits (72), Expect = 0.057
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLR 159
+ H G + + FD ++ T S DRT+K+W + L+
Sbjct: 172 IQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLK 211
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 299 TVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
T+ Q L + G I +D + L+T D+T+K+WK
Sbjct: 425 TIVQPGSLESEAG-IYAACYDNTGSRLVTCEADKTIKMWK 463
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 34.3 bits (75), Expect = 0.025
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -3
Query: 275 NAHDGSINDIYFDEA--SNTLLTASEDRTVKVWKLTQASL 162
N H S+ DI D + ++++SEDRT KVW L++ L
Sbjct: 170 NEHTMSVTDIVIDYGGCNAVIISSSEDRTCKVWSLSRGKL 209
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 329 SGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
SG + W + T + H S+ + F + L++ S+D +++VW L
Sbjct: 99 SGDIYLWEVATGKLLKKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSL 149
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 34.3 bits (75), Expect = 0.025
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = -3
Query: 350 LLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
+L V++ W++ + A A + H G + I F E L TA+ED V++W L +
Sbjct: 367 ILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED-GVRLWDLRK 425
Query: 170 ASLRSICSF 144
LR+ SF
Sbjct: 426 --LRNFKSF 432
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
L H + + F S+ +LTAS D+TV++W+
Sbjct: 260 LTGHSKKVTSVKFVGDSDLVLTASADKTVRIWR 292
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 34.3 bits (75), Expect = 0.025
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = -3
Query: 350 LLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
+L V++ W++ + A A + H G + I F E L TA+ED V++W L +
Sbjct: 367 ILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED-GVRLWDLRK 425
Query: 170 ASLRSICSF 144
LR+ SF
Sbjct: 426 --LRNFKSF 432
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
L H + + F S+ +LTAS D+TV++W+
Sbjct: 260 LTGHSKKVTSVKFVGDSDLVLTASADKTVRIWR 292
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 34.3 bits (75), Expect = 0.025
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 329 SGVLRQWNMLTVAQN-A*LNAHDGSINDIYFDEASNTLL-TASEDRTVKVWK 180
SGV + W + V L H + D+ F + L TAS DRT K+WK
Sbjct: 84 SGVPKLWEVPQVTNKIVVLKGHKEHVTDVVFSSVDDECLATASTDRTEKIWK 135
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 33.9 bits (74), Expect = 0.033
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
H G +N + +D + L + S+D T K+W + Q++
Sbjct: 447 HQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQST 481
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L+ H G I + +++ + LLT S DRT VW
Sbjct: 361 LSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVW 392
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 33.9 bits (74), Expect = 0.033
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 275 NAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRS 156
N H ++ I F+ A + ++T S+D VK+WK + ++S
Sbjct: 186 NGHSSTVWSISFNAAGDKMVTCSDDLAVKIWKTDISRMQS 225
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 33.9 bits (74), Expect = 0.033
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
L WNM + + L AH+G I + A+ + +AS D+ VK+WK
Sbjct: 886 LELWNM-SENKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
Score = 32.7 bits (71), Expect = 0.075
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
W T+ L H I DI F + L T+S D+TV+VW
Sbjct: 678 WYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 33.9 bits (74), Expect = 0.033
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 359 GNSLLXIXEGSGVLRQWNMLTVA-QNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
G LL GV+ WN+ Q+ +AHD SI + F L++AS D ++K+W
Sbjct: 236 GRPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMW 295
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 272 AHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRS 156
AHDG + + D + +++A +KVW + L+S
Sbjct: 472 AHDGEVIGVACDSTNTLMISAGYHGDLKVWDFKKRELKS 510
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 33.9 bits (74), Expect = 0.033
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLR 159
L H G + + FD ++ T S DRT+K+W + L+
Sbjct: 166 LQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLK 205
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 299 TVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
T+ Q L + G I +D+ + L+T D+T+K+WK
Sbjct: 418 TIVQPGSLESEAG-IYAACYDQTGSRLVTCEGDKTIKMWK 456
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 323 VLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
V R W++ T Q L HD + + ++T S D T+K W L
Sbjct: 277 VCRVWDIRTKMQIFVL-PHDSDVFSVLARPTDPQVITGSHDSTIKFWDL 324
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 33.9 bits (74), Expect = 0.033
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
G LR W++ T H + + F + +++AS DRT+K+W
Sbjct: 85 GELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLW 132
Score = 29.9 bits (64), Expect = 0.53
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 224 TLLTASEDRTVKVWKLTQASLRS 156
T+++AS D+TVKVW L LR+
Sbjct: 165 TIVSASWDKTVKVWNLQNCKLRN 187
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 33.5 bits (73), Expect = 0.043
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
W + + L H I + F ++TAS D+TVK+W ++ S
Sbjct: 526 WRLPDLVHVVTLKGHKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGS 574
Score = 33.1 bits (72), Expect = 0.057
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 272 AHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
AHD IN + + + T SEDRT +W+L
Sbjct: 497 AHDKDINSVAVARNDSLVCTGSEDRTASIWRL 528
Score = 32.7 bits (71), Expect = 0.075
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 269 HDGSINDIYF--DEASNTLLTASEDRTVKVWKLTQASLRSIC 150
H G ++ I F D N L++ S+D TV+VW L + C
Sbjct: 143 HKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNTEKKC 184
Score = 32.3 bits (70), Expect = 0.100
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 359 GNSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEAS-NTLLTASEDRTVKVW 183
GN L+ +R WN + + H+G I + F + S + ++ S DRT+KVW
Sbjct: 415 GNVLIVTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVW 474
Query: 182 KL 177
L
Sbjct: 475 SL 476
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -3
Query: 356 NSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
+ LL S +R W++ T+ H+G + + + L TA DR V VW
Sbjct: 72 DKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATAGADRKVLVW 129
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 33.5 bits (73), Expect = 0.043
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLR 159
L+ H G +N + F+ + LL+ S+DR V +W AS++
Sbjct: 51 LDKHKGCVNTVSFNADGDILLSGSDDRQVILWDWQTASVK 90
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 33.5 bits (73), Expect = 0.043
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -3
Query: 272 AHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
AH +I DI + + + LLTAS D+T+KVW + +
Sbjct: 126 AHYNAIFDISWIKGDSCLLTASGDQTIKVWDVEE 159
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 33.5 bits (73), Expect = 0.043
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
G LR W++ T H + + F + +++AS DRT+K+W
Sbjct: 85 GELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLW 132
Score = 29.9 bits (64), Expect = 0.53
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 224 TLLTASEDRTVKVWKLTQASLRS 156
T+++AS D+TVKVW L LR+
Sbjct: 165 TIVSASWDKTVKVWNLQNCKLRN 187
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = -3
Query: 230 SNTLLTASEDRTVKVWKLTQ 171
S+ ++TAS D+++ +WKLT+
Sbjct: 28 SDIIVTASRDKSIILWKLTK 47
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 33.5 bits (73), Expect = 0.043
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 275 NAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRS 156
N H ++ I F+ A + ++T S+D T+K+W A ++S
Sbjct: 210 NGHSSTVWSISFNAAGDKMVTCSDDLTLKIWGTDIAKMQS 249
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 359 GNSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
G++ + I E S + R W TV + H ++ + + L TAS D T +WK
Sbjct: 47 GDNTVRIWEQSSLSRSWTCKTVLEET----HTRTVRSCAWSPSGQLLATASFDGTTGIWK 102
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 272 AHDGSINDIYFD--EASNTLLTASEDRTVKVWKL 177
AH+ +N + + E + L +AS+D VK+W+L
Sbjct: 315 AHENDVNSVQWSPGEGNRLLASASDDGMVKIWQL 348
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 33.5 bits (73), Expect = 0.043
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 290 QNA*LNAHDGSINDIYFDEASNTL--LTASEDRTVKVW 183
Q+ ++AH G +NDI F + L T +D+T+KVW
Sbjct: 454 QHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVW 491
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 33.5 bits (73), Expect = 0.043
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 290 QNA*LNAHDGSINDIYFDEASNTL--LTASEDRTVKVW 183
Q+ ++AH G +NDI F + L T +D+T+KVW
Sbjct: 454 QHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVW 491
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 33.5 bits (73), Expect = 0.043
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
L H G + D+ + + SN LL+AS+D+TV++W+
Sbjct: 268 LYGHTGDVLDLAWSD-SNLLLSASKDKTVRLWR 299
Score = 32.3 bits (70), Expect = 0.100
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLT 174
+N H G I + F L T ED VK+W++T
Sbjct: 194 INGHKGKIWTLKFSPDGKYLATGGEDGVVKIWRIT 228
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 33.5 bits (73), Expect = 0.043
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -3
Query: 314 QWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
QW++ T + H G++N I F + + +T+S+D++++VW+
Sbjct: 396 QWDINTGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 440
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVW 183
H ++ DI F + LTA D+ +K W
Sbjct: 325 HAKAVRDICFSNDGSKFLTAGYDKNIKYW 353
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 33.1 bits (72), Expect = 0.057
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSIC 150
L H ++ FD + ++T S+DR VK+W + A + C
Sbjct: 301 LRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASC 343
Score = 32.7 bits (71), Expect = 0.075
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3
Query: 323 VLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+++ W+M T A H+G I D+ + + +AS D ++VW+L
Sbjct: 328 LVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRL 376
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.1 bits (72), Expect = 0.057
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 275 NAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
+AHDGSI + F + +A ED V+VW +T+
Sbjct: 215 SAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITE 249
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.1 bits (72), Expect = 0.057
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 275 NAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
+AHDGSI + F + +A ED V+VW +T+
Sbjct: 215 SAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITE 249
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 32.7 bits (71), Expect = 0.075
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 323 VLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+++ W++ +H+G I + F L T S DRTVK W L
Sbjct: 166 IVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDL 214
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
H +N + F +++ ED VKVW LT L
Sbjct: 142 HTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKL 177
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
L H I+ + FD + + + T+K+W L +A +
Sbjct: 55 LYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKI 93
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 32.7 bits (71), Expect = 0.075
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 323 VLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+++ W++ +H+G I + F L T S DRTVK W L
Sbjct: 166 IVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDL 214
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
H +N + F +++ ED VKVW LT L
Sbjct: 142 HTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKL 177
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
L H I+ + FD + + + T+K+W L +A +
Sbjct: 55 LYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKI 93
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 32.7 bits (71), Expect = 0.075
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDI-YFDEASNT-LLTASEDRTVKVW 183
++ WN+ + N L+AH +N + YF L+T S+D T KVW
Sbjct: 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSICSF 144
W+ T + L+ H +++ + F ++T SED TV++W T L + ++
Sbjct: 214 WDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 HDGSINDIYFD-EASNTLLTASEDRTVKVWKL 177
H + + F+ + +NT +AS DRT+K+W L
Sbjct: 141 HSHYVMQVVFNPKDTNTFASASLDRTIKIWNL 172
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 32.7 bits (71), Expect = 0.075
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDI-YFDEASNT-LLTASEDRTVKVW 183
++ WN+ + N L+AH +N + YF L+T S+D T KVW
Sbjct: 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSICSF 144
W+ T + L+ H +++ + F ++T SED TV++W T L + ++
Sbjct: 214 WDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 HDGSINDIYFD-EASNTLLTASEDRTVKVWKL 177
H + + F+ + +NT +AS DRT+K+W L
Sbjct: 141 HSHYVMQVVFNPKDTNTFASASLDRTIKIWNL 172
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 32.7 bits (71), Expect = 0.075
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDI-YFDEASNT-LLTASEDRTVKVW 183
++ WN+ + N L+AH +N + YF L+T S+D T KVW
Sbjct: 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSICSF 144
W+ T + L+ H +++ + F ++T SED TV++W T L + ++
Sbjct: 214 WDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 HDGSINDIYFD-EASNTLLTASEDRTVKVWKL 177
H + + F+ + +NT +AS DRT+K+W L
Sbjct: 141 HSHYVMQVVFNPKDTNTFASASLDRTIKIWNL 172
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 32.7 bits (71), Expect = 0.075
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSI 153
+ AH+G++ I F + ++ L + DR + VW++ + L S+
Sbjct: 400 IQAHEGAVWTIKFSQDAHYLASGGADRVIHVWEVQECELMSM 441
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 32.7 bits (71), Expect = 0.075
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDI-YFDEASNT-LLTASEDRTVKVW 183
++ WN+ + N L+AH +N + YF L+T S+D T KVW
Sbjct: 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSICSF 144
W+ T + L H +++ + F ++T SED TV++W T L + ++
Sbjct: 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 HDGSINDIYFD-EASNTLLTASEDRTVKVWKL 177
H + + F+ + +NT +AS DRT+K+W L
Sbjct: 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 32.7 bits (71), Expect = 0.075
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSICSFF 141
+ AHD ++N + A + + T S D TVKVWK R+ S F
Sbjct: 173 IKAHDDAVNSV--TTAESLVFTGSADGTVKVWKREIRGKRTAHSLF 216
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
H +++ + E L +AS DRTVKVW++
Sbjct: 134 HSDAVSCLSLAEDQGLLYSASWDRTVKVWRI 164
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 32.3 bits (70), Expect = 0.100
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 290 QNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
Q+ + AHDG+I + F L ++ ED V+VWK+ +
Sbjct: 213 QSQDIKAHDGAILAMKFSNDGKFLASSGEDGIVRVWKVVE 252
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
H G + DI + + N LL+AS D+TV++WK+
Sbjct: 327 HTGEVLDISWSK-DNYLLSASMDKTVRLWKV 356
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 32.3 bits (70), Expect = 0.100
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -3
Query: 317 RQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLR 159
++ + L V Q +AHDGSI + F L +A ED V+VW + + R
Sbjct: 242 KELSSLCVGQE--FSAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERR 292
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 32.3 bits (70), Expect = 0.100
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = -3
Query: 290 QNA*LNAHDGSINDIYFDEASNTL--LTASEDRTVKVWKLT 174
Q+ ++AH G++ND+ F + L +T +D+ +KVW ++
Sbjct: 444 QHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIKVWDVS 484
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 32.3 bits (70), Expect = 0.100
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSI 153
L AH+ I + L TAS D+TVK+W L L +
Sbjct: 213 LQAHNSHILKCLLSPGNKYLATASSDKTVKIWNLDGFKLEKV 254
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -3
Query: 359 GNSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
GN L ++ WN+ L H+ + D F L+TAS D T ++W
Sbjct: 228 GNKYLATASSDKTVKIWNLDGFKLEKVLTGHERWVWDCDFSMDGEYLVTASSDTTARLWS 287
Query: 179 L 177
+
Sbjct: 288 M 288
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3
Query: 323 VLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+++ W+M T A H+G I D+ + + +AS D ++VW+L
Sbjct: 268 LVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVWRL 316
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSIC 150
L H ++ D + ++T S+DR VKVW + A + C
Sbjct: 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASC 283
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 272 AHDGSINDIYF-DEASNTLLTASEDRTVKVW 183
AH +N + F DE+ N +L+ S+D KVW
Sbjct: 269 AHTSDVNTVCFADESGNLILSGSDDNLCKVW 299
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 224 TLLTASEDRTVKVWKLTQASLRS 156
T+++AS D+TVKVW L+ LRS
Sbjct: 166 TIVSASWDKTVKVWNLSNCKLRS 188
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
G LR W++ H + + F + +++AS DRT+K+W
Sbjct: 85 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 132
>At1g15850.1 68414.m01902 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
mRNA-associated protein mrnp 41 (SP:P78406) [Homo
sapiens]; similar to mitotic checkpoint protein
GI:9294423 from [Arabidopsis thaliana]
Length = 140
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 317 RQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVK 189
+ W +L+ AQ + + HD N I + N L+T S D+T+K
Sbjct: 98 KMWPLLSGAQPSTVAMHDAPFNQIAWIPGMNLLVTGSWDKTLK 140
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 323 VLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
V++ W++ H+G I + F L T S DRTVK W L
Sbjct: 114 VVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWDL 162
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
LR W+ H I+ I F +++ D VKVW LT L
Sbjct: 73 LRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKL 125
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/64 (20%), Positives = 31/64 (48%)
Frame = -3
Query: 356 NSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+SL+ + G +R W+ N+H G++ + +++ + L + S+D + +W +
Sbjct: 76 SSLVAVGYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWDV 135
Query: 176 TQAS 165
S
Sbjct: 136 VGES 139
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 290 QNA*LNAHDGSINDIYFDEASNTL--LTASEDRTVKVWKLTQASL 162
Q+ ++AH G +ND+ F + + +T +D+ +KVW L+ L
Sbjct: 445 QHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWDLSGKKL 489
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQA 168
+ AH GSI I F L +A ED +++WK+ ++
Sbjct: 359 IQAHKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVES 395
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 323 VLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
V++ W++ +H+G I + F L T S D+TVK W L
Sbjct: 259 VVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWDL 307
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
H +N + F +++ ED VKVW LT L
Sbjct: 235 HTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKL 270
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
L H I+ + FD + + + T+K+W L +A +
Sbjct: 148 LYGHSSGIDSVTFDASEGLVAAGAASGTIKLWDLEEAKV 186
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSI 153
+ AH G I + F S+ L +A ED + VW++ + + S+
Sbjct: 407 IQAHQGGIWTMKFSPDSHLLASAGEDCAIHVWEVQECEIMSM 448
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L H G +N + F+ + L++ S+DR V +W
Sbjct: 55 LEKHKGCVNTVSFNAEGDVLISGSDDRRVVLW 86
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat; contains Pfam PF00069: Protein kinase domain;
contains PF02985: HEAT repeat; similar to adaptor protein
(GI:1817584) [Homo sapiens]; similar to VPS15 protein
(GI:6103009) [Pichia pastoris]
Length = 1494
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L H ++NDI + ++AS+D TVKVW
Sbjct: 1077 LQEHRSAVNDIATSSDHSFFVSASDDSTVKVW 1108
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
L H +I+ + F N L +AS D+T+ +W T SL
Sbjct: 39 LEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSL 77
Score = 29.9 bits (64), Expect = 0.53
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
+R W + T + AH I+ ++F+ + +++AS D + K+W
Sbjct: 152 IRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIW 197
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVW 183
H I+D+ + S+ +AS+D T+++W
Sbjct: 84 HSSGISDLAWSSDSHYTCSASDDCTLRIW 112
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 317 RQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
+ W +L+ Q + H+G I + + N L T S D+T+K W Q
Sbjct: 97 KMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQ 145
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDI-YFDEASNT-LLTASEDRTVKVW 183
++ WN+ + N L+AH +N + YF L+T S+D T KVW
Sbjct: 167 IKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSICSF 144
W+ T + L H +++ + F ++T SED TV++W T L + ++
Sbjct: 214 WDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 269 HDGSINDIYFD-EASNTLLTASEDRTVKVWKL 177
H + + F+ + +NT +AS DRT+K+W L
Sbjct: 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 323 VLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
V++ W++ H+G I + F L T S DRTVK W L
Sbjct: 165 VVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDL 213
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
L H +++ + FD A +L + +K+W + +A +
Sbjct: 54 LCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKM 92
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/58 (20%), Positives = 24/58 (41%)
Frame = -3
Query: 350 LLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
L+ SGV++ W++ H + + + F L + S D +K+W +
Sbjct: 72 LVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDI 129
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
++AHD +IN + + + T S D TVKVWK
Sbjct: 273 IHAHDDAINSV-MSGFDDLVFTGSADGTVKVWK 304
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 290 QNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS-LRSI 153
+N+ H+ +++ + D L ++S D T+KVW++ + L SI
Sbjct: 227 RNSVKTKHNDAVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCLESI 273
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSICS 147
L+ HD + I N + T+S DRT++VW L + R S
Sbjct: 16 LHGHDDDVRGICVCNDEN-IATSSRDRTIRVWSLDPSDKRKYTS 58
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 233 ASNTLLTASEDRTVKVWK 180
+S +++ASEDR K+WK
Sbjct: 240 SSGLIVSASEDRHAKIWK 257
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSICS 147
L+ HD + I N + T+S DRT++VW L + R S
Sbjct: 16 LHGHDDDVRGICVCNDEN-IATSSRDRTIRVWSLDPSDKRKYTS 58
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 233 ASNTLLTASEDRTVKVWK 180
+S +++ASEDR K+WK
Sbjct: 240 SSGLIVSASEDRHAKIWK 257
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 30.7 bits (66), Expect = 0.30
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 275 NAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
+ H GSI + + S +LT S D++ KVW++ +
Sbjct: 93 DGHKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAE 127
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 30.7 bits (66), Expect = 0.30
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L H + I F ++ +LTAS D+TV++W
Sbjct: 260 LTGHSKKVTSIKFVGDTDLVLTASSDKTVRIW 291
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -3
Query: 350 LLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+L +++ W++ + A A H+G I I F E L TA+ D V++W L
Sbjct: 368 ILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALD-GVRLWDL 424
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 30.3 bits (65), Expect = 0.40
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
G + W++ T L H+ + + + + L + S D TVK+W +T ++
Sbjct: 563 GTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTSST 616
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSIC 150
L H G + F + +L++S D T+++W T+ + +C
Sbjct: 414 LLGHSGPVYSATFSPPGDFVLSSSADTTIRLWS-TKLNANLVC 455
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 263 GSINDIYFDEASNTLLTASEDRTVKVW 183
G ++D+ + N + T S D+TV++W
Sbjct: 500 GHLSDVDWHPNCNYIATGSSDKTVRLW 526
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/48 (22%), Positives = 20/48 (41%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+R W+ A H+ + D F + + S DRT ++W +
Sbjct: 442 IRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSM 489
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -3
Query: 356 NSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
+S+L + WNM T L H + + +D + + + S+D+TV +W+
Sbjct: 130 DSMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWR 188
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 0.40
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
L HD ++ + + A+ ++T S D+TVK W AS
Sbjct: 94 LGTHDKAVRCVEYSYAAGQVITGSWDKTVKCWDPRGAS 131
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 30.3 bits (65), Expect = 0.40
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQA 168
+ AH+GSI I F L +A ED + +W++ +A
Sbjct: 409 IQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEA 445
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQA 168
L HD ++ I + SN ++T S DR VW L A
Sbjct: 51 LQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSLEGA 87
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQA 168
L HD ++ I + SN ++T S DR VW L A
Sbjct: 51 LQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSLEGA 87
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQA 168
L HD ++ I + SN ++T S DR VW L A
Sbjct: 51 LQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSLEGA 87
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 332 GSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLL-TASEDRTVKVW 183
G LR W++ + AHD I +++ + +L T+S D+TVKVW
Sbjct: 170 GDCTLRIWDVREPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVW 220
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 29.9 bits (64), Expect = 0.53
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSICS 147
G +++W + +++ + +AH+ +NDI S+T AS D T+ VW L S+ S
Sbjct: 259 GSVQKWELASLSCVSSYHAHEEVVNDIGI--LSSTGKVASCDGTIHVWNSQTGKLISLFS 316
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = -3
Query: 272 AHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQA 168
AHDG + + E S+ L+++S D+T+++W L ++
Sbjct: 452 AHDGYVTKLVAPE-SHLLVSSSLDKTLRIWDLRKS 485
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 29.9 bits (64), Expect = 0.53
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L+ H + I S+ L TAS+D TV++W
Sbjct: 140 LDGHQKVVTGIALPSGSDKLYTASKDETVRIW 171
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 29.9 bits (64), Expect = 0.53
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -3
Query: 329 SGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
SGV++ W+ + H+G + ++F + ++ +D +KVW
Sbjct: 30 SGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVW 78
Score = 29.5 bits (63), Expect = 0.70
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
L H +++ + F + +++ SED++++VW T+
Sbjct: 244 LRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATK 279
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
L HD +N F +++ ++DR VK+W++ +
Sbjct: 200 LEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNE 235
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
++ WN T L H I + F + +++AS+D+T+++W
Sbjct: 75 IKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIW 120
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+R WN + + L H+ + F + +++AS D+TV+VW +
Sbjct: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 29.9 bits (64), Expect = 0.53
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -3
Query: 329 SGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
SGV++ W+ + H+G + ++F + ++ +D +KVW
Sbjct: 30 SGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVW 78
Score = 29.5 bits (63), Expect = 0.70
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
L H +++ + F + +++ SED++++VW T+
Sbjct: 244 LRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATK 279
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
L HD +N F +++ ++DR VK+W++ +
Sbjct: 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 320 LRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+R WN + + L H+ + F + +++AS D+TV+VW +
Sbjct: 117 IRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 29.9 bits (64), Expect = 0.53
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
L HD +I ++ S+ LL+ S DRTV++W+
Sbjct: 322 LRGHDKAILSLF--NVSDLLLSGSADRTVRIWR 352
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
L H ++N + ++ + L + S DR++ VW+ S
Sbjct: 276 LEKHKSAVNALALNDDGSVLFSGSCDRSILVWEREDTS 313
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 29.5 bits (63), Expect = 0.70
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
G +R W++ + H G++ + N L++ D TV++W + + SL
Sbjct: 79 GDIRLWDISSRRTVCQFPGHQGAVRGLTASTDGNVLVSCGTDCTVRLWNVPRPSL 133
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.5 bits (63), Expect = 0.70
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
L H+GSI I + + +++ S+DR+ ++W++
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI 264
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.5 bits (63), Expect = 0.70
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
L H+GSI I + + +++ S+DR+ ++W++
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI 264
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 29.5 bits (63), Expect = 0.70
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -3
Query: 350 LLXIXEGSGVLRQWNMLTVAQNA*--LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
LL G +R WN+ + H ++ E +L+ S D+T++VW++
Sbjct: 865 LLFSGFSDGSIRVWNVNKKIATLLWDIKEHKSTVTCFSLSETGECVLSGSADKTIRVWQI 924
Query: 176 TQASL 162
+ L
Sbjct: 925 VKGKL 929
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 29.5 bits (63), Expect = 0.70
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
L H + D F + + ++S D+T++VW+L++
Sbjct: 212 LTGHSKDVTDFDFSSNNQYIASSSLDKTIRVWELSR 247
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVW 183
H +N F + ++TAS D TVKVW
Sbjct: 346 HTSYVNHAIFTSDGSRIITASSDCTVKVW 374
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
HD + I F S L + S+D +K+W++
Sbjct: 262 HDDPVLCIDFSRDSEMLASGSQDGKIKIWRI 292
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/65 (21%), Positives = 27/65 (41%)
Frame = -3
Query: 356 NSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
+ +L G ++ W + T +AH + + F + LL+ S D+T ++ L
Sbjct: 275 SEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQTARIHGL 334
Query: 176 TQASL 162
L
Sbjct: 335 KSGKL 339
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWK 180
H+ + I N L T SED T+K+WK
Sbjct: 481 HEKDVIGITHHPHRNLLATYSEDCTMKLWK 510
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.5 bits (63), Expect = 0.70
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTA-SEDRTVKVWKLTQ 171
GV++ W++ + H+ + I + A TLL + S+D +VK+W + Q
Sbjct: 556 GVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 608
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.5 bits (63), Expect = 0.70
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTA-SEDRTVKVWKLTQ 171
GV++ W++ + H+ + I + A TLL + S+D +VK+W + Q
Sbjct: 556 GVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 608
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 29.1 bits (62), Expect = 0.93
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = -3
Query: 296 VAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
++Q L H G +N + ++ + L++ S+D + +W + L
Sbjct: 40 LSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKL 84
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 0.93
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
L H ++ + F S ++TAS+D +++VW +
Sbjct: 285 LKGHKSAVTWLCFSPNSEQIITASKDGSIRVWNI 318
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.1 bits (62), Expect = 0.93
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L H +I D+++ + +++AS D+TV+ W
Sbjct: 92 LKGHKNAILDLHWTSDGSQIVSASPDKTVRAW 123
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS-LRSI 153
H +++ + ++ L +AS DRT+KVW++ + L SI
Sbjct: 205 HADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCLESI 244
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 272 AHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
AHD ++N + + + S D TVK WK Q
Sbjct: 246 AHDDAVNSVV-STTEAIVFSGSADGTVKAWKRDQ 278
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSI 153
W++ + Q L H I I E +TL+T S+D T +VW +++ S ++
Sbjct: 1007 WDIRSGKQMHKLKGHTKWIRSIRMVE--DTLITGSDDWTARVWSVSRGSCDAV 1057
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/55 (18%), Positives = 26/55 (47%)
Frame = -3
Query: 317 RQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASLRSI 153
R W++ + +A L H G + + + ++T S D ++ W+ + ++ +
Sbjct: 1045 RVWSVSRGSCDAVLACHAGPVQSVEYSPFDKGIITGSADGLLRFWENDEGGIKCV 1099
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
W+ T L HD ++ + + +LTA+ D TVK+W
Sbjct: 924 WDKQTTQLLEELKGHDSQVSCVKM-LSGERVLTAAHDGTVKMW 965
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L H +N +YF + +AS D++V++W
Sbjct: 356 LTGHQQLVNHVYFSPDGKWIASASFDKSVRLW 387
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
G R W++ L+ H ++ + + + T S+D T+K+W+ TQ L
Sbjct: 221 GDARIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQDCTIKMWETTQGKL 274
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
H G ++ + F + + SED T+++W+ T A+
Sbjct: 269 HHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPAN 303
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
H G ++ + F + + SED T+++W+ T A+
Sbjct: 269 HHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPAN 303
>At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 512
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 257 INDIYFDEASN--TLLTASEDRTVKVWKLTQASLRSIC 150
IN I + + +N L ++ D+T+K WK+ ++ IC
Sbjct: 117 INKIRWCQTANGALFLLSTNDKTIKFWKVQDKKIKKIC 154
>At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 513
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 257 INDIYFDEASN--TLLTASEDRTVKVWKLTQASLRSIC 150
IN I + + +N L ++ D+T+K WK+ ++ IC
Sbjct: 117 INKIRWCQTANGALFLLSTNDKTIKFWKVQDKKIKKIC 154
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLL-TASEDRTVKVW 183
WN+ L+ H ++N + ++ + +L +AS+D+T+++W
Sbjct: 470 WNLKNTKPLEVLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
L AH + + F + L TAS D T +WK+
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKV 253
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
+ AH+G+I + F L +A ED ++VW + +
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVE 282
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
+ AH+G+I + F L +A ED ++VW + +
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVE 282
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
L H + N + + + +ASED TV +WKL
Sbjct: 346 LKYHRATCNAVSYSPDCELMASASEDATVALWKL 379
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
L+ H+ +++ F + + TL+TAS D T+K+W L + +
Sbjct: 878 LSGHNKAVSYAKFLD-NETLVTASTDNTLKLWDLKKTT 914
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 269 HDGSINDIYFDEASNT-LLTASEDRTVKVWK 180
HDG + D+ + T L+++S D TVK+W+
Sbjct: 339 HDGEVTDLSMCQWMTTRLVSSSVDGTVKIWQ 369
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 272 AHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQ 171
AH I + F LL+ S D ++KVW L Q
Sbjct: 371 AHTDDITSVKFSSDGRILLSRSFDGSLKVWDLRQ 404
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKL 177
W++ T H +++ + F ++ L + S DRTVKVW +
Sbjct: 249 WDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGSFDRTVKVWNV 293
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 275 NAHDGSINDIYFDEASNTLLTASEDRTVKVWKLT 174
+ H GSI + + +LT S D++ K+W ++
Sbjct: 229 DGHKGSIYAVSWSPDGKQVLTVSADKSAKIWDIS 262
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 269 HDGSINDIYFDEASNT-LLTASEDRTVKVWK 180
HDG + D+ + T L+++S D T+K+W+
Sbjct: 320 HDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQ 350
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 269 HDGSINDIYFDEASNT-LLTASEDRTVKVWK 180
HDG + D+ + T L+++S D T+K+W+
Sbjct: 355 HDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQ 385
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -3
Query: 359 GNSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
GN L G L W+ T H +N + + S L T ++D VKVW
Sbjct: 318 GNWLTFGCAKLGQLLVWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 377
Query: 179 L 177
+
Sbjct: 378 V 378
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -3
Query: 359 GNSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
GN L G L W+ T H +N + + S L T ++D VKVW
Sbjct: 358 GNWLTFGCAKLGQLLVWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 417
Query: 179 L 177
+
Sbjct: 418 V 418
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/69 (20%), Positives = 32/69 (46%)
Frame = -3
Query: 359 GNSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
G +L ++ W++ T+ L H G++ + + L+++S D T+KVW
Sbjct: 267 GGQMLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCWD--KCLISSSLDGTIKVWA 324
Query: 179 LTQASLRSI 153
++ + +
Sbjct: 325 YSENGILKV 333
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYF----DEASNTLLTASEDRTVKVWKLTQA 168
G+ R W+ + L H G+I+ + D + T+ TAS+DRT++++K A
Sbjct: 131 GLGRVWSSAGSCSHI-LEGHSGAISSVALVNSNDAETVTVATASKDRTLRLFKFDPA 186
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 326 GVLRQWNMLTVAQNA*LNAHDGSINDIYF----DEASNTLLTASEDRTVKVWKLTQA 168
G+ R W+ + L H G+I+ + D + T+ TAS+DRT++++K A
Sbjct: 131 GLGRVWSSAGSCSHI-LEGHSGAISSVALVNSNDAETVTVATASKDRTLRLFKFDPA 186
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
+NAH+ ++N + + T S D TVKVW+
Sbjct: 249 VNAHEDAVNAVV-SGFDGLVFTGSADGTVKVWR 280
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 272 AHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQASL 162
AH GS+ I ++ LT S+D VK+W A L
Sbjct: 2373 AHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKL 2409
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS 165
L H+ + + + A+ ++T S D+T+K W AS
Sbjct: 93 LGTHEKPVRCVEYSYAAGQVITGSWDKTIKCWDPRGAS 130
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = -3
Query: 359 GNSLLXIXEGSGVLRQW--NMLT--VAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTV 192
G LL G + W N T +A L H ++ +Y +N L + S D+T+
Sbjct: 239 GTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYV--GANRLYSGSMDKTI 296
Query: 191 KVWKL 177
KVW L
Sbjct: 297 KVWSL 301
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 311 WNMLTVAQNA*LNAHDGSINDIYFDEAS-NTLLTASEDRTVKVWKL 177
W+ T L H G++N + + + + L +AS+D T+++W L
Sbjct: 516 WHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWGL 561
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -3
Query: 359 GNSLLXIXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTL-LTASEDRTVKVW 183
GN + G++R ++ + + L H S+N+I L +TAS+D +V++W
Sbjct: 97 GNPYVAAGGVKGIIRVIDVNSETIHKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRLW 156
Query: 182 KL 177
+
Sbjct: 157 NV 158
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -3
Query: 293 AQNA*LNAHDGSINDIYFD-EASNTLLTASEDRTVKVW 183
A++ L H S++ + +D + S+ + TAS D++V++W
Sbjct: 57 AKDLELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLW 94
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS-LRSI 153
H +++ + +E L + S D+T+KVW+L+ + L SI
Sbjct: 248 HYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESI 287
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 302 LTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWK 180
L V + + L+ H G + + +D + TL + D VK+W+
Sbjct: 268 LPVKKVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQ 308
>At5g26270.1 68418.m03135 expressed protein ; expression supported
by MPSS
Length = 305
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 181 FHTLTVLSSLAVNNVFEASSK*ISFIDPSCAFSYAFC 291
F + V S + ++ VF+ SS+ + + + +SY FC
Sbjct: 230 FDAVLVTSCVTLDTVFQESSQIVLIVRFALCYSYDFC 266
>At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing
protein prolamin box binding factor, Zea mays,
PATCHX:G2393775
Length = 249
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 299 TVAQNA*LNAHDGSINDIYFDEASNTLL 216
TV N L HDGS Y+D S+ LL
Sbjct: 149 TVRPNHRLAFHDGSFEQDYYDVGSDNLL 176
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWK 180
H G ++ + F + + SED T+++W+
Sbjct: 269 HHGPVHCVRFAPTGESYASGSEDGTIRIWQ 298
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKVWKLTQAS-LRSI 153
H +++ + +E L + S D+T+KVW+L+ + L SI
Sbjct: 244 HFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSKCLESI 283
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 278 LNAHDGSINDIYFDEASNTLLTASEDRTVKVW 183
L H S+N F+ L T+ DR + VW
Sbjct: 395 LRGHYESVNTCCFNSNDQELYTSGSDRQILVW 426
>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 548
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 312 MEHAHCSTERVAECTRRINKRYLFR*GLEHIVNS 211
+EHA + +RV +RINK ++ GL++ +NS
Sbjct: 338 LEHARETRKRVQGIAKRINKMHVE--GLDNAINS 369
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 269 HDGSINDIYFDEASNTLLTASEDRTVKV 186
H +I+D+ D + TAS D T+K+
Sbjct: 10 HSDTIHDVVMDYYGKRVATASSDCTIKI 37
>At1g74770.1 68414.m08663 expressed protein
Length = 985
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 267 VCIQLRVLCYSEHVPLSEH 323
+C+ LR +C S H LSEH
Sbjct: 737 LCLSLREICKSMHKLLSEH 755
>At1g61680.1 68414.m06957 terpene synthase/cyclase family protein
similar to 1,8-cineole synthase [GI:3309117][Salvia
officinalis]; contains Pfam profile: PF01397 terpene
synthase family
Length = 569
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -3
Query: 341 IXEGSGVLRQWNMLTVAQNA*LNAHDGSINDIYFDEASNTLLTASEDRTVKVWKLTQA 168
+ + +LR W+ L A++ + DGS + Y +E + T E RT K+++A
Sbjct: 464 VSSAATILRLWDDLGSAKDENQDGTDGSYVECYLNEYKGS--TVDEARTHVAQKISRA 519
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,835,457
Number of Sequences: 28952
Number of extensions: 91671
Number of successful extensions: 557
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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