Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0142
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    27   2.3  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    27   2.3  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   9.3  

>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 545 RCY*LHRVWHYPSLALVYGTVLQ-NPEFKKKKKK 643
           +C+ ++ +  +P +A +YG+ L+ NP F +  +K
Sbjct: 295 KCFIVNELMRWPKIAEIYGSALRSNPVFAENDEK 328


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 545 RCY*LHRVWHYPSLALVYGTVLQ-NPEFKKKKKK 643
           +C+ ++ +  +P +A +YG+ L+ NP F +  +K
Sbjct: 295 KCFIVNELMRWPKIAEIYGSALRSNPVFAENDEK 328


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 49  TTVRYQNAKRRNKNVRSLKVKKNPI 123
           T  R  NAKR   ++RS   KK PI
Sbjct: 753 TNFRKHNAKRSKTDIRSWFEKKQPI 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,324
Number of Sequences: 5004
Number of extensions: 42285
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)