Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0142
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43632| Best HMM Match : EGF (HMM E-Value=0.6)                       28   5.6  
SB_52354| Best HMM Match : EGF (HMM E-Value=0.0011)                    28   5.6  
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)           28   7.4  

>SB_43632| Best HMM Match : EGF (HMM E-Value=0.6)
          Length = 201

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 444 ARCVCVIIKFSTVCLV 397
           ARC C+++ F+TVC+V
Sbjct: 129 ARCYCLLLGFTTVCIV 144


>SB_52354| Best HMM Match : EGF (HMM E-Value=0.0011)
          Length = 294

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 444 ARCVCVIIKFSTVCLV 397
           ARC C+++ F+TVC+V
Sbjct: 129 ARCYCLLLGFTTVCIV 144


>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
          Length = 945

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/66 (21%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +3

Query: 216 LVSVIVCYVLNKIYNASPLS*FCACLIFFYSH-TICLLAIRKMKI*SVLR*HSSYENVKK 392
           +V+++ C++++  ++ + L+  C  +I+F ++     ++IR+         H++ E+ +K
Sbjct: 313 IVTIVFCFLISAFFSKAKLAAACGGIIYFLTYMPFVFVSIREGAA------HATIESSEK 366

Query: 393 LALSTL 410
           +A+S L
Sbjct: 367 MAISLL 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,328
Number of Sequences: 59808
Number of extensions: 307501
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)