Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0142
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55500.1 68414.m06349 expressed protein contains Pfam profile...    30   1.1  
At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.5  

>At1g55500.1 68414.m06349 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 549

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 361 DNIPATRTLKNSH*AHCTKLYDNANTTGSRVLSRPYYAR 477
           +N+PATR   +S  +H T +Y  A+ TG    ++ YY R
Sbjct: 203 NNVPATRNQNSSSNSHYTSMYQPASMTG--YAAQGYYDR 239


>At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 438

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 438 NGQPRSLETVLCALIY--FSWVELRAMQKYYEIKLCGNDVISYIVSGIIHHL 587
           +G     E+V+ AL     +W+ +  MQKY+ I      +  ++  G  HHL
Sbjct: 52  SGGSAQYESVMAALHRRRLNWIPVLQMQKYHSISQVTLQLQQHLAKGFHHHL 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,323,266
Number of Sequences: 28952
Number of extensions: 203021
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)