Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0140
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 30 0.36
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 27 1.9
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 27 1.9
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 2.6
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.4
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.4
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.5
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 5.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.9
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 26 5.9
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.9
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 7.8
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.8
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 29.9 bits (64), Expect = 0.36
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 561 ITDTMLMYSEFRDSFLAQSNVPTNSPSRHVILVKIYH 671
+T+ ++Y FR+++ + +P N S +V L +YH
Sbjct: 193 LTEQAILYQNFRENWWSNIKLPQNLKSLYVELCLVYH 229
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 PLGEWQLEVTNEGRYMEAGTLTQWELIFYG-TETPAQEQDVSPETNSL 143
P G W+L V + GT W+L +G +E P+ + +T L
Sbjct: 555 PEGVWKLLVNDRSGGKHEGTFENWQLALWGESENPSNTAPLPYDTLEL 602
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 186 QTRSKVSCQPENFHPKSWSP 127
QT +++ +FHPKSW+P
Sbjct: 81 QTNTRLCLSFSDFHPKSWNP 100
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 7 WASGNWRSQMKA-ATWKPAL*LNGS*FSTEQRHRLRSKTCHRRPTLWVKILGLTRNLGPC 183
WAS WR K A + + L + + T +H+ + KT W+K +T GP
Sbjct: 312 WAS--WREITKTKANYDNGIRLENASWRTWMKHKFKLKTISPETLNWLKECDVTWLYGPL 369
Query: 184 LSLNL 198
L ++
Sbjct: 370 LHTSM 374
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 93 TETPAQEQDVSPETNSLGENSRVDTKPWTLSEPESIEEVRQNAIDDDLA 239
T+ +D+S E + T + PE+ E V +N++D+ +A
Sbjct: 56 TQVVENTEDISASNVVSAEGAEASTGDASTQSPETSENVVKNSVDESVA 104
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/91 (25%), Positives = 39/91 (42%)
Frame = +3
Query: 57 GTLTQWELIFYGTETPAQEQDVSPETNSLGENSRVDTKPWTLSEPESIEEVRQNAIDDDL 236
GTL W Y E D++ + G+N VD W S+ E+ N
Sbjct: 152 GTLALWAKYSY-------EYDLTSIVSLFGKNWTVDELGWGTYIAHSLNEISSNTTGAAN 204
Query: 237 ALVWHDSQTIREENPVGAGDVDTGQYAASAA 329
A ++ D+QT + + A +++ +YA +A
Sbjct: 205 ATLFIDTQT-KSDCYKLASTIESWKYAPLSA 234
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 105 AQEQDVSPETNSLGENSRVDTKPWTLSEPESIEEVRQNAIDDDLALVWHDSQTIREENP 281
+ E ++S TN+L N+ KP++LS S + L +W +T+ NP
Sbjct: 277 SNEVNLSASTNNLSTNTSGTLKPYSLSSSRSSSYSKGVNSAASLQSIW---ETMNNSNP 332
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +3
Query: 48 MEAGTLTQW-ELIFYGTET----PAQEQDVSPETN-SLGENSRVDTKPWTLSEPESIEEV 209
M AG++ ++ E +GT + P+ V + + S G N+ ++ WT P+++EE
Sbjct: 31 MNAGSVNEYSEQQRHGTNSFNGKPSVHDSVGSDASVSNGHNNHNESSLWTSGIPKALEEA 90
Query: 210 RQNAIDDDL 236
++ D L
Sbjct: 91 TKSKKPDSL 99
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 5.9
Identities = 24/86 (27%), Positives = 35/86 (40%)
Frame = +3
Query: 108 QEQDVSPETNSLGENSRVDTKPWTLSEPESIEEVRQNAIDDDLALVWHDSQTIREENPVG 287
+E D+ N + E + V TKP + PE+ V Q + AL + + P+
Sbjct: 843 KEGDIIRVMNHVNELNGVSTKPASAITPETKSTVNQ-IMSGGEAL----AAPVAVPAPIP 897
Query: 288 AGDVDTGQYAASAAGCATHAPQPPHT 365
A + AA A AP PP T
Sbjct: 898 APVAEPAPPAAPAKEVVEKAPSPPAT 923
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 183 SEPESIEEVRQNAIDDDLALVWHD--SQTIREENPV 284
SE E EEV+++ I DD+A + + +QT ++ PV
Sbjct: 54 SEDEIEEEVQESTIADDIADILNQQVTQTDEQDTPV 89
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 75 ELIFYGTETPAQEQDVSPETNSLGENSRVDTKP 173
E I TP E V P+ N + VD KP
Sbjct: 228 ERIKQAQNTPFLESKVLPQNNETSDEENVDVKP 260
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 177 SKVSCQPENFHPKSWSP 127
SKV +PE F+P W+P
Sbjct: 422 SKVYPEPETFNPDRWAP 438
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 130 RPTLWVKILGLTRNLGPCLSLNLLKK 207
R ++WV GL + LG C++ L K+
Sbjct: 189 RTSVWVAFNGLGQILGSCMAYGLAKR 214
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -3
Query: 301 STSPAPTGFSSRIV*ESCQTRARSSSMAFCLTSSIDSGSDKVQGFVSTREFSPKELVSGD 122
ST+PA + S IV + SS A TSS+ S +S S VS
Sbjct: 229 STTPASSSSSGAIVSNAKTASTDDSSSASSATSSVSSVVSSASSALSASASSASASVSSS 288
Query: 121 TS 116
S
Sbjct: 289 AS 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,837
Number of Sequences: 5004
Number of extensions: 48526
Number of successful extensions: 154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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