Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0140
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245... 32 0.50
06_03_0736 - 23989881-23990483,23991475-23991489 31 0.87
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 30 1.5
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 30 2.0
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281... 28 6.2
05_05_0263 - 23673014-23673697,23673772-23674188 28 6.2
03_06_0195 + 32256771-32258792 28 6.2
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 28 6.2
06_01_0623 + 4536817-4536868,4537129-4537328,4537401-4537609,453... 28 8.1
>02_05_1264 +
35321972-35322448,35323022-35323252,35323903-35324565,
35324698-35324806,35324965-35325383
Length = 632
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 99 TPAQEQDVSPETNSLGENSRVDTKPWTLSEPESI-EEVRQNAIDDDLALVWHDSQTIREE 275
TP + Q + ETN G + V + L EPE++ + QNAIDD + +++
Sbjct: 245 TPVKAQGSNEETNGGGYSCDVFSLDEILQEPENVCKNEEQNAIDDKFTIAELSGYPRQDD 304
Query: 276 NPVG 287
VG
Sbjct: 305 GYVG 308
>06_03_0736 - 23989881-23990483,23991475-23991489
Length = 205
Score = 31.1 bits (67), Expect = 0.87
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +3
Query: 96 ETP---AQEQDVSPETNSLGENSRVDTKPWTLSEPESIEEVRQNAIDDDLALVWHDSQTI 266
ETP A ++ PE G RV K T V N DDD H+ +
Sbjct: 106 ETPPAAADAKEAEPEEEGGGGRRRVQAKKTTEKAASKAAIVPVNDDDDDDQA--HEDVVV 163
Query: 267 REENPVGAGDVDTGQYAASAAGCATHAPQ 353
PV A +T + AA+AAG AP+
Sbjct: 164 AA--PVAAEHQETAEAAAAAAGEEEEAPE 190
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 147 ENSRVDT--KPWTLSEPESIEEVRQ--NAIDDDLALVWHDSQTIREENPVGAGDVDTGQY 314
E S VD+ + WT S+ + +EV Q + L L W Q + + P G G G
Sbjct: 562 EPSSVDSTDRTWTASQSNNGDEVEQLSSGAVSPLELSWQGKQKLPSQEPSGGGRSRVGPT 621
Query: 315 AASAAGCATH 344
+ G + H
Sbjct: 622 GNAQRGRSAH 631
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 231 DLALVWHDSQTIREENPVGAGDVDTGQYAASAAGCATHAPQPPHTCIG 374
D A + S + + GA QYAA+AA H QPPH G
Sbjct: 79 DGAKMQQASHVLARQKSFGAESHGIPQYAAAAAVHGAHRGQPPHVLNG 126
>11_01_0370 +
2814888-2814979,2815450-2815620,2815753-2815834,
2816275-2816316,2816397-2816456,2816817-2816913,
2817382-2819024,2819155-2819256,2819369-2819509,
2819625-2819750,2819935-2820096
Length = 905
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 120 VSPETNSLGENSRVDTKPWTLSEPESIE-EVRQNAIDDDLA 239
+ P+ + L N+ D PWT ++PES + +V +++I D A
Sbjct: 514 LGPQFHHLCHNAGADLVPWTDAKPESSDRDVPESSIHADSA 554
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 300 DTGQYAASAAGCATHAPQPP 359
D +A + AGCATHA +PP
Sbjct: 61 DGPSFACALAGCATHAFRPP 80
>03_06_0195 + 32256771-32258792
Length = 673
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 96 ETPAQEQDVSPE-TNSLGENSRVDTKPWTLSEPESIEEVRQNAIDDDLALVWHDSQTIRE 272
E+ +E D E T L +S DT+ S E + ++DDD + + + I
Sbjct: 200 ESTDEESDYEEEDTTDLESDSDEDTESTESSHDEDDLDDDDESLDDDGSECFDEEDKIGT 259
Query: 273 ENPVGAGDVDTG 308
ENP VDTG
Sbjct: 260 ENP-DDESVDTG 270
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 580 ISIVSVIAH*LVINCSQGALGGLVTLCFTPNLKLAVSAQFL 458
+ I+ + +V++ S +GGL TLCF + +S L
Sbjct: 129 VKIIKCLVDNIVVDISFNQVGGLCTLCFLEEVDALISQNHL 169
>06_01_0623 +
4536817-4536868,4537129-4537328,4537401-4537609,
4538531-4538954
Length = 294
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -3
Query: 364 VCGGCGAWVAQPAALAAYCPVSTSPAPTGFSSRIV*ESCQTRARSSSMAF 215
V GG GA V Q A+ A PVS G SS+ + +T A S+ M F
Sbjct: 95 VIGGAGASVGQNVAIPALFPVSAFGICLGMSSQEI--LWKTVATSTPMRF 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,977,017
Number of Sequences: 37544
Number of extensions: 359746
Number of successful extensions: 1104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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