Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0140
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)           37   0.014
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)                    35   0.072
SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26)                 31   0.67 
SB_53497| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.89 
SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   3.6  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               29   3.6  
SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_21366| Best HMM Match : YL1 (HMM E-Value=6.4)                       29   4.8  
SB_41592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_12386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)          28   8.3  

>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
          Length = 605

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 3   PLGEWQLEVTNEG-RYMEAGTLTQWELIFYGT-ETPAQEQDVSPE 131
           P G W LE+ + G      GTL +W+LI +GT + PA +Q   P+
Sbjct: 304 PRGTWTLEIKDLGDNKANHGTLREWQLILHGTKDKPAHQQKEHPD 348


>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
          Length = 912

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
 Frame = +3

Query: 27  VTNEGRYMEAGTLTQWELIFYGT--ETPAQEQDVSPETNSLGENSRVDTKPW---TLSEP 191
           VT E + ME   L+  E +      E+   E+D   +  SL ++   ++K      LS+ 
Sbjct: 512 VTRESKLMEKDALSDLESLLQSVTRESKLMEKDALSDLESLLQSVTRESKLMEKDALSDL 571

Query: 192 ESIEE--VRQNAIDDDLALVWHDSQTIREE--NPVGAGDVDTGQYAASAAGCATHAPQPP 359
           ES+ +   R++ + +  A V     T   E  N + AGD+ TG    S+     H P  P
Sbjct: 572 ESLLQSVTRESKLMEKDAFVDSAGGTFVTESGNAIEAGDLSTGIITVSSGASIPHTPMTP 631

Query: 360 HT 365
            T
Sbjct: 632 MT 633


>SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26)
          Length = 319

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 114 QDVSPETNSLGENSRVDTKPWTLSEPESIEEVRQNAID 227
           Q+  P +  L E  ++DT+P  ++EPE I+ +  +A++
Sbjct: 103 QEEKPSSVELEEQKQMDTEPEMITEPERIQAIELSALE 140


>SB_53497| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 462

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 379 HKPMQVCGGCGAWVAQPAALAAYCPVSTSPAPT 281
           HKP+Q C  CG + A P++L A+  V    AP+
Sbjct: 429 HKPLQ-CDTCGQFFALPSSLEAHLKVHLDEAPS 460


>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +1

Query: 97  RHRLRSKTCHRRPTLWVKILGLTRNLGPCLSLNLL-----KK*DRTPLMMIWL 240
           R + R+K C  +P+LW  + GLT +L   + L  +          TP+M+ WL
Sbjct: 107 REQERAKRCFTKPSLWRALFGLT-SLSEVIFLEFMFLMGSVSIISTPIMLYWL 158


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 186  QTRSKVSCQPENFHPKSWSPVTRLAPEPVSLFRRKSAPIELKCRLP 49
            Q  S+ + QP    P+S  P   +APE  +LF + S P++ K  +P
Sbjct: 887  QLNSQRTSQPTLSQPRSQHPPKAMAPEQ-TLFSQPSTPLDHKEEVP 931


>SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -3

Query: 346 AWVA-QPAALAAYCPVSTSPAPTGFSSRIV*ESCQTR--ARSSSMAFCLTSSIDSG 188
           AW   QP  L A  P S SP PT  +  ++   C       SS +  CL    DSG
Sbjct: 319 AWALWQPTLLQACVPSSLSPPPTS-TEPVIPRPCPVEFLTISSQLCICLGDLQDSG 373


>SB_21366| Best HMM Match : YL1 (HMM E-Value=6.4)
          Length = 365

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 93  TETPAQEQDVSPETNSLGENSRVDTKPWTLSEPESIEEVRQN 218
           T   ++ Q ++P T+    N+  DT   T  + + +E+VRQ+
Sbjct: 54  TTNNSRSQHITPNTHQYSRNTAADTSNITSVDIQEMEQVRQH 95


>SB_41592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 216 NAIDDDLALVWHDSQTIREENPVGAGDVD 302
           NA+DD +   WH      ++N  G  DVD
Sbjct: 33  NALDDTIEFKWHAISDSDDDNDDGVSDVD 61


>SB_12386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +3

Query: 435 RSRQPLRLRNCALTANLRLGVKHNVTRPPRAPCEQLITS**AITDTMLMYSEF 593
           R R  LRLR+ A T NLRL     + +   +P +Q   S     DT     EF
Sbjct: 323 RFRLRLRLRHYAKTTNLRLATTDELLKDYASPSQQTPLSRSKTFDTFNALREF 375


>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
          Length = 1814

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +3

Query: 21  LEVTNEGRYMEAGTLTQWELIFYGTETPAQEQDVSPETNSLGENSRVDTKPWTLSEPESI 200
           ++  ++ R +  G+LT+  L+ +G E  A+          LG  SR++   +TLS+  +I
Sbjct: 374 VKFASDSRSIWIGSLTEDYLVVFGQEQDARGGGFDVYQKFLGRMSRINIWNYTLSQ-STI 432

Query: 201 EEV 209
           +E+
Sbjct: 433 QEM 435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,285,570
Number of Sequences: 59808
Number of extensions: 386307
Number of successful extensions: 1083
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)