Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0140
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.69 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.69 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 551 LVSYN*HNANVFRVSRLVSRTEQCTNQLA 637
           L SYN  N NV++ + +V     CT+ L+
Sbjct: 301 LGSYNKFNNNVYKDALIVCTVNSCTSMLS 329


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 551 LVSYN*HNANVFRVSRLVSRTEQCTNQLA 637
           L SYN  N NV++ + +V     CT+ L+
Sbjct: 354 LGSYNKFNNNVYKDALIVCTVNSCTSMLS 382


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 171 VSCQPENFHPKSWSPVTR 118
           VSC P+  HP++   V+R
Sbjct: 362 VSCSPQTVHPETIIDVSR 379


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -3

Query: 337 AQPAALAAYCPVSTSPAPTGFSSRIV*ESCQT--RARSSSMAFCLTSS 200
           A  AA   Y     SP+PTG S +    S  T   AR++S  +   S+
Sbjct: 47  AVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSA 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,968
Number of Sequences: 438
Number of extensions: 3424
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)