Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0140
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27280.1 68415.m03278 hypothetical protein                          29   3.9  
At2g46380.1 68415.m05773 hypothetical protein weak similarity to...    28   5.1  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   5.1  
At1g73130.1 68414.m08456 expressed protein                             27   9.0  

>At2g27280.1 68415.m03278 hypothetical protein 
          Length = 427

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 111 EQDVSPETNSLGENSRVDTKPWTLSEPESIEEVRQNAIDDDLA 239
           E++VSP++   G +S+   KP   S  E  +E ++   +D +A
Sbjct: 369 EKEVSPDSGDFGLSSKKSVKPQDASIKEEAKETQKATREDAIA 411


>At2g46380.1 68415.m05773 hypothetical protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 732

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 625 GTLLCARNESRNSEYISIVSV 563
           GT+LCA+N+ R ++ +S+ SV
Sbjct: 36  GTVLCAKNKDREADLLSVKSV 56


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 180 RSKVSCQPENFHPKSWSPVTRLAPEPVSLFRRKSA 76
           R +    P + H K+ SPV R +P PV+   R+S+
Sbjct: 563 RGRGKSSPSSRHQKARSPVRRRSPTPVNRRSRRSS 597


>At1g73130.1 68414.m08456 expressed protein
          Length = 646

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +3

Query: 90  GTETPAQEQDVSPETNSLGENSRVDTKPWTLSEPESIEEVRQNAIDDDLALVWHDSQTIR 269
           G E P    D S  +NSL          W  S  +S+EEV+  +  D ++     +Q+  
Sbjct: 405 GDEKPIITDDESWISNSLTSQKSSAGNSWVFSGEDSVEEVKVKSCRDVVSTESQSTQSSM 464

Query: 270 E 272
           E
Sbjct: 465 E 465


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,859
Number of Sequences: 28952
Number of extensions: 269065
Number of successful extensions: 777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)