Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0139
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    29   0.69 
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   2.1  
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    26   3.7  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.9  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   6.4  

>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 342 KLTSLMRQRIGMETEAKKNTKIINQK*HPHK*RPKSNGTRNNIDG--DREKKYSHYIKLK 515
           K  S  +   G   + KK  KI  +K   HK + K + ++    G  D+E+K    IKLK
Sbjct: 174 KKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLK 233


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 473 IDVIPSPVALRSSFMW--MLFLIDDFCIFFGFS 381
           +D + SPV LR   +   M+ +I+   +FFGFS
Sbjct: 187 LDALVSPVLLRGCILSISMIIMINQGSVFFGFS 219


>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 289 VSKEAWLLLSFYKNLYQSSLS 227
           +SK+ W    F+KN+Y S+LS
Sbjct: 96  ISKDMWDPTDFHKNVYASALS 116


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 392 KKYKNHQSKITST*MKTEEQRD*E*HRWRQRKKIQPLHKVERTHHHEKRL 541
           KK+ +H+S  TS     E   D +     Q ++   L + ER   HE+RL
Sbjct: 323 KKFASHKSPTTSDSSNVESSEDVDPASLLQNEEFHKLIE-ERQRQHEERL 371


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 212 YRLQHLLFCLTSSVFFLRLSA*HHYYP 132
           Y+ + LLF L   + ++R+   HH YP
Sbjct: 82  YKSRKLLFSLCGHMDYVRVCTFHHEYP 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,512
Number of Sequences: 5004
Number of extensions: 36119
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)