Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0139
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    31   0.95 
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  

>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 257 LQESLPIFAFWFLVLYRLQHLLFCLTSSVFFLR 159
           LQ S P   F FLV++    ++ C   SVFF R
Sbjct: 38  LQHSDPFIIFLFLVVFMFATIMMCFLISVFFSR 70


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 154  ERRRKKTEEVRQNNRCWRR*STKNQKAK 237
            E  RKK EE+RQ    WR+   + Q+ K
Sbjct: 1171 EAARKKQEEIRQKQAAWRQQEEEEQRVK 1198


>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 154 ERRRKKTEEVRQNNRCWRR*STKNQKAKIGKDSCKKREEAK 276
           E++RKK ++ ++  +  ++   KN+K K  K+  KK+++ K
Sbjct: 16  EKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMK 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,227,102
Number of Sequences: 59808
Number of extensions: 238938
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)