Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0139
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53800.1 68418.m06685 expressed protein                             32   0.34 
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    29   1.8  
At4g14730.1 68417.m02265 transmembrane protein-related low simil...    27   7.2  
At3g01260.1 68416.m00032 aldose 1-epimerase family protein simil...    27   7.2  
At2g34640.1 68415.m04255 expressed protein                             27   9.6  

>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 154 ERRRKKTEEVRQNNRCWRR*STKNQKAKIGKDSCKKREEAK 276
           +R+RK+ EE  +  +  RR   K ++ K  KD  KKR+E K
Sbjct: 134 KRKRKEREEEEKERKRRRREKDKKKRNKSDKDGDKKRKEKK 174


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 148 QAERRRKKTEEVRQNNRCWRR*STKNQKAKIGKDSCKKREE 270
           + ERRRK+ EE R+     RR   + ++ +  +   KKREE
Sbjct: 442 EIERRRKEEEEARKREEAKRREEEEAKRREEEETERKKREE 482


>At4g14730.1 68417.m02265 transmembrane protein-related low
           similarity to transmembrane protein OTMP [Ovis aries]
           GI:9965379
          Length = 235

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 245 LPIFAFWFLVLYRLQHLLFCLTSSVFFLRLS 153
           LP+   W L+ +  +H + C+  S+F L +S
Sbjct: 76  LPLLLLWPLLAFEKKHPINCIVLSIFTLSIS 106


>At3g01260.1 68416.m00032 aldose 1-epimerase family protein similar
           to non-cell-autonomous protein pathway2, plasmodesmal
           receptor [Nicotiana tabacum] GI:15824567; contains Pfam
           profile PF01263: Aldose 1-epimerase
          Length = 378

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 462 NNIDGDREKKYSHYIKL-KGHTTTKNACAYNLYLSVNIPYTN*KKKKK 602
           NN DGD EKK     +L KG+ T K        +S+  P  N  KK+K
Sbjct: 90  NNDDGDDEKKTLRVHELKKGNLTVKFTNRGASIMSLLFPNINASKKEK 137


>At2g34640.1 68415.m04255 expressed protein 
          Length = 527

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 219 QKPESEDW*RFL*KERRSQASLLTATLRRN*VKVKNTFPTWKLTSLMRQR 368
           +KPE E W R+  +    +   L A      VK+    PT   TSL R R
Sbjct: 236 RKPEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGEEPTLTETSLYRAR 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,218,321
Number of Sequences: 28952
Number of extensions: 178265
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)