Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0138
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    30   0.32 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   1.7  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   2.2  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    26   5.2  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   5.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.8  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   9.0  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   9.0  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   9.0  

>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 153 ATSAGKPLLSAPVSQRRNLQTRSQLLDEPHLRLPLGLCRSLVSDASRIRPE 305
           AT A + LLS PV  R  +  R+ L   P  +LP+     +++ AS+  P+
Sbjct: 3   ATMAAQSLLSIPVEYRSQVWCRANLPYPPAPQLPIPAVVDILTKASQALPQ 53


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +1

Query: 73   TESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKP 216
            T S + + PP  T S   T  A  + SPPPP    + HP    GT  P
Sbjct: 901  TSSVSTLPPPPPTASM--TASAPAIASPPPPKVGETYHPPTASGTRVP 946


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -1

Query: 513 PFEYDETSFNSQ*EVIAFVRRSLSFPLVGQYSVVCGVHSEGDDSGVRGQFII 358
           PF+ + T   +  +V+A++ +S+ +     YSV+  +     D   + Q I+
Sbjct: 127 PFKDESTRTMTDPQVLAYIHQSMPYQYASLYSVLTDLKIVNSDVSCKSQHIL 178


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -1

Query: 513 PFEYDETSFNSQ*EVIAFVRRSLSFPLVGQYSVVCGVHSEGDDSGVRGQFII 358
           PF+ + T   +  +V+A++ +S+ +     YSV+  +     D   + Q I+
Sbjct: 127 PFKDESTRTMTDPQVLAYIHQSMPYQYASLYSVLTDLKIVNSDVSCKSQHIL 178


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 136  ASYLMSPPPPVNPCSLHPCRNGGTCKP 216
            +S + +PPPPV P +  P  N    +P
Sbjct: 1372 SSNVHAPPPPVQPMNAMPSHNAVNARP 1398


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 720 VQPAWYSTDVYVGVSVHDVGDTGGRRALVNSVDGEPGVSVLVQTS 586
           V P W     Y+ +  HDV         VNS  G+ GV+ L++T+
Sbjct: 373 VDPVWKVP--YLPLDPHDVNSEYAAIIRVNSQSGKGGVAYLLKTN 415


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 660 DTGGRRALVNSVDGEPGVSVLVQTSGDL 577
           D   RRA ++  DG  G +V+ +TS  L
Sbjct: 39  DADARRAFISGFDGSAGCAVIGETSAAL 66


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 133 IASYLMSPPPPVNPCSL-HPCRNGGTCKPDRNSWMNHTCDCP 255
           + S +  PPPP  P     P  N  T     +S M H+ D P
Sbjct: 266 LGSQVNIPPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSP 307


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 616 LSVDGVDKSAPATGISNVMNADSNIYIGGIPSWLNIHGY 732
           L  D  D     + +   M+  +NIY G + + L++ GY
Sbjct: 825 LQRDFTDVDPVRSLMKKTMHGSTNIYFGAVKATLHVFGY 863


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +1

Query: 520 GGGLSSIVVDVPINDGERHQVAARLHEDGHAWL 618
           GG ++S++  + + DG+  ++ + L E G+ W+
Sbjct: 554 GGDIASVLAGLRVFDGQVEKLHSVLEEIGYNWV 586


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 701 PPMYMLESAFMTLEIPVAGALLSTPSTESQACPSS 597
           PP     S   T+ +P+ GA    PST S + P S
Sbjct: 58  PPSSSSPSTTGTVAVPINGANAVYPSTNSVSLPQS 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,981
Number of Sequences: 5004
Number of extensions: 73524
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)