Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0138
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.59 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +1

Query: 55  NGGSCSTESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDRNSWM 234
           +  S +++S +   PP    S       SYL      ++PC+   C  G  C+   NS +
Sbjct: 44  DASSSNSDSLSMTIPPSIDRSSIHEE--SYLAESSRSIDPCASKYCGIGKECELSPNSTI 101

Query: 235 NHTCDC 252
              C C
Sbjct: 102 -AVCVC 106


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 49  CENGGSCSTESTNCICPPGY 108
           C+  G     S  C C PGY
Sbjct: 234 CKGDGKWYLPSGGCHCKPGY 253



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +1

Query: 34  SESCQCENGGSCSTES--TNCICPPGYTGSYCETRIASYLMSPPPPVN 171
           S SC+     S S++   T C C PGY  +  + +       P  P N
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRCDPGYFRAEKDPKKMPCTQPPSAPQN 323


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 718 NIHGYPGFIGCI 753
           N+HG PG +G I
Sbjct: 333 NLHGMPGILGGI 344


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 78  IHQLHMPTRLYGIVLRDAHRILPDVATSA 164
           +H L    +++G   R  HR+   V  S+
Sbjct: 195 VHSLEFSDQIHGYRCRTMHRLTRQVVVSS 223


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 78  IHQLHMPTRLYGIVLRDAHRILPDVATSA 164
           +H L    +++G   R  HR+   V  S+
Sbjct: 195 VHSLEFSDQIHGYRCRTMHRLTRQVVVSS 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.137    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,221
Number of Sequences: 438
Number of extensions: 5517
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)