Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0135
         (663 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   4.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   6.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   6.5  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 598 DALNRYRTAGRVSSP*HHCA*CEFFKLFL*RKGWLIF 488
           +A + YR  G V SP H+ A  E   + +  K +L+F
Sbjct: 110 NASSEYRINGSVVSPQHYLAELEKIGINVKAKNFLVF 146


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 453 SGKRTQTIPFHTNMSQPLRYRKSLK 527
           S  R + +PF+++ ++ LRY + +K
Sbjct: 319 SNGRFEQVPFNSDQNEDLRYAQIIK 343


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 453 SGKRTQTIPFHTNMSQPLRYRKSLK 527
           S  R + +PF+++ ++ LRY + +K
Sbjct: 319 SNGRFEQVPFNSDQNEDLRYAQIIK 343


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,707
Number of Sequences: 2352
Number of extensions: 9629
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)