Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0132
(783 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ... 32 0.37
At1g79910.1 68414.m09336 expressed protein contains Pfam profile... 31 0.86
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ... 31 1.1
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 30 2.0
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 2.6
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 29 3.5
At3g58220.1 68416.m06491 meprin and TRAF homology domain-contain... 29 3.5
At2g38800.1 68415.m04764 calmodulin-binding protein-related cont... 29 3.5
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 29 4.6
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 29 4.6
At4g28690.1 68417.m04099 expressed protein 28 6.1
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 28 6.1
At3g15095.1 68416.m01909 expressed protein 28 6.1
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 28 8.0
At1g61360.1 68414.m06915 S-locus lectin protein kinase family pr... 28 8.0
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 28 8.0
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 28 8.0
>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 32.3 bits (70), Expect = 0.37
Identities = 24/98 (24%), Positives = 47/98 (47%)
Frame = +2
Query: 98 FCKMGNIKCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKD 277
FC N +CK I + +E+ +++ + DVSD S+ + D S + D +
Sbjct: 617 FCIQCNSRCKVSVILKILKDSEDGSDDGSDDVSDDVSDDPSNDVSDDTSDDDSDVVSDVV 676
Query: 278 HDNASSASTVEVLDDK*SVLKMWMCSKNLFSNFKDPKI 391
D+AS+ + + DD ++CS++ S++ +I
Sbjct: 677 SDDASNDDSDDTSDDH----NGYICSRSCLSSYLGEEI 710
>At1g79910.1 68414.m09336 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 381
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 149 EPVAEETNNERIRTLKTDVS-DVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDD 322
EP E+TN+E +T++ S + +D+ D+S SI E+D + S + DD
Sbjct: 195 EPKTEKTNSEPEKTMEKRSSLSFHGREDSMDDSNKSIMSTSEEDSMSTSGSCMTGPEDD 253
>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 391
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/72 (26%), Positives = 37/72 (51%)
Frame = +2
Query: 215 NSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK*SVLKMWMCSKNLFSNFKDPKII 394
++S D D+ + +E++E+D D + + DDK SV++ + +K +PKI
Sbjct: 264 DNSDDDDDDDDDDDEEDEEEDEDESEADD-----DDKDSVIESSLPAKRKHDEIIEPKIK 318
Query: 395 LINFFAHIFERN 430
L N I +++
Sbjct: 319 LKNLCKQIVKKD 330
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 143 QSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDD 322
QS P E ++NE L +DVSD S +A+ ++ + + HDN + TV +D
Sbjct: 414 QSRP--ETSDNETDLVLLSDVSDTAPSTEAKGVNQILVGSTETLMHDNDRTGKTVPDKED 471
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +2
Query: 182 IRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK*SVL---KMWMC 352
+ + TDV V+ K+ +S IDE EK S T LD V K+
Sbjct: 4 VTEMPTDVVVVDDVKEVSTKSEKIIDEGIEKSSITDSKTETESRLDMHKLVAMFKKLNPL 63
Query: 353 SKNLFSNFKDPK 388
+K F ++ DPK
Sbjct: 64 AKEFFPSYYDPK 75
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +2
Query: 119 KCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNA 289
K +V+ EP E+ +N + +VN + + E + DE+++ D D++
Sbjct: 706 KSAKVETLDHEPPQEQISNGNSNGNGMEEKEVNGKPEVETEKKEKKDESQDDDKDDS 762
>At3g58220.1 68416.m06491 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 487
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 143 QSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRN----SIDENKEKDHDN 286
+SEPV+++ ER R S+ S KD+++ SR +E +KD +N
Sbjct: 248 ESEPVSKKDYEERPRESFEYESEAESKKDSEEGSRERYEYESEEESKKDSEN 299
>At2g38800.1 68415.m04764 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 612
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 170 NNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHD-NASSASTVEVLD 319
N+E I +K +D + DES I E + KD D + SS E++D
Sbjct: 388 NSEVIDMMKNTEADTAIGETLVDESMKEIQEKENKDEDADESSCFVSELID 438
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 188 TLKTDVSDVNSSKDAQDESRNSIDENKEKDHD 283
T D +D N S A+ ES S DE+K+ HD
Sbjct: 283 TKNLDAADKNGSLTAKAESIASKDESKDNSHD 314
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 119 KCKRVKITQSEPVAEETNNERIRTLKTDVS-DVNSSKDAQDESRNSIDENKEKDHD 283
K K+ K + E V EE + + K S D ++ DA+DES E K+K D
Sbjct: 497 KEKKKKKDKKEEVIEEVASPKSEKKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKD 552
>At4g28690.1 68417.m04099 expressed protein
Length = 448
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 152 PVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDEN 265
PVA + N +RI T V+ SK+A+ SRN N
Sbjct: 345 PVASQGNAQRIVTGSISTVPVSQSKEAKQFSRNMYSAN 382
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/50 (18%), Positives = 23/50 (46%)
Frame = +2
Query: 143 QSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNAS 292
+ E + E+++ D + + + + +N ++EN + HDN +
Sbjct: 459 EKEKAKKLAEEEKMKKAARDARRIKKKAEEEHKKKNKVEENGDVSHDNGN 508
>At3g15095.1 68416.m01909 expressed protein
Length = 684
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 125 KRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKE 271
+RVK+ + V EE +I + + K +DE RN+I+E ++
Sbjct: 401 ERVKVVEDSIVEEEQEASKILDSFEEEIEATIMKKIEDEIRNAIEEEEK 449
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 176 ERIRTLKTDVSDVNSSKDAQ--DESRNSIDENKEKD 277
ERIR K+ ++DV DA+ ++S + + E+ E D
Sbjct: 782 ERIRAFKSGITDVEDVDDAERDEDSESDVGEDPEVD 817
>At1g61360.1 68414.m06915 S-locus lectin protein kinase family
protein contains protein kinase domain, Pfam:PF00069;
contains S-locus glycoprotein family domain,
Pfam:PF00954
Length = 821
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 113 NIKCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNAS 292
NIK +T + + + T + + L+T D + S + +S+DENK + NAS
Sbjct: 763 NIKQVMSMLTSTTDLPKPT--QPMFVLETSDEDSSLSHSQRSNDLSSVDENKSSEELNAS 820
Query: 293 S 295
S
Sbjct: 821 S 821
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Frame = +2
Query: 110 GNIKCKRV-KITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDN 286
G ++ K + K +E EE ++ + + D D + DA+ + D + D+
Sbjct: 464 GRLRRKAIFKTDLNEDDFEEADDLELDSYDPDTYDFEEADDAESDDNEVEDGGDDSASDS 523
Query: 287 ASSASTVEVLDDK*S-VLKMWMCSKNLFSNFKDPKIILINFFA 412
A +DDK S + W + K+P ++ I + A
Sbjct: 524 ADGEPGDYQIDDKDSGNISQWKAPLKEIARKKNPNLMQIVYGA 566
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 173 NERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSA 298
N+R++T D + KD QDE+ N + + D +N A
Sbjct: 155 NKRLKTESGADQDTSEEKDGQDETENGNELDDADDGENEVEA 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,752
Number of Sequences: 28952
Number of extensions: 287855
Number of successful extensions: 817
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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