Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0131
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    28   1.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.7  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   3.9  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    26   5.1  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   5.1  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.7  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.9  
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    25   8.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.9  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    25   8.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   8.9  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 674 GVSKSTQDQSGFEYAMAVMKMCDILH 751
           G  ++T D   F + +AV+K CDI+H
Sbjct: 149 GSGRNTTDIVLFPFVLAVIKCCDIVH 174


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +3

Query: 258 NSSVDLLTSSET*FRKALTTITNPSLRSG*DLVSSSFCTILATWKSS*VVTFTSIKLRNT 437
           +SS  + TSS + F  ++TTI++    S      SS  +IL++  SS   T  SI   +T
Sbjct: 540 SSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST 599

Query: 438 VSSNHGSET 464
            S+   + T
Sbjct: 600 SSTFSSAST 608


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 452 WLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVV 586
           W+GNG    T   + +  + I  T HL    S +D  + N+  V+
Sbjct: 67  WIGNGHAAETTLYFPASHQQIQLTLHLENQNSIVDSIHINADTVL 111


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 736 HFHNGHSIFESALILCTLAHTHSSFQ*NFNRALAHVVMAIKITSFLFKFV 587
           H H   + F S++ L    HTH S+Q     A+A V+   K TS +F+ +
Sbjct: 341 HTHPTQTCFMSSVDL----HTHCSYQLMLPEAIAIVMAPSKNTSGIFRLL 386


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 266 GGSADIFRNIVQKSADYD 319
           GG   +FR +  KS+DYD
Sbjct: 216 GGGRKLFRKVANKSSDYD 233


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 384 TWKSS*VVTFTSIKLRNTVSSNHGSETVFLSVLVKNGGLIVNLSPPHS 527
           T+ SS  V +  +    + +++H S T F+      GGL  NLS P S
Sbjct: 96  TFGSSNFVPYNLLSNTPSFTTSHSSSTTFVPPATMGGGL-NNLSSPSS 142


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 71  SYTNAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRLYELADKLN 220
           S +N  NV   +T S I LF+  +    +  + +W+   R L  L D+L+
Sbjct: 252 SLSNLVNVWLKTTRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLNDQLH 301


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 281 IFRNIVQKSADYDHESVVKIWIGPRLLVFLYDPRDVEVILSSHVYIDKAEEYRF 442
           + ++++ K+    +E+ V+ +    +L+      DVE + S  +YID  E+Y F
Sbjct: 485 VMQSLLSKATSATNENSVRAFWAFMVLL----KSDVETVDSLEMYIDSLEQYSF 534


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 64  QHELYKRRKCSAYKHVFCDQPLLCVTC 144
           Q ELY R + S Y HV  D   +  +C
Sbjct: 111 QTELYPRSQISVYLHVLQDDGAVMASC 137


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 423 KLRNTVSSNHGSETVFLSVLVKNGGL 500
           K+++ ++S HG  TV  S+L+ N G+
Sbjct: 55  KVKDYIAS-HGGHTVITSILIANNGI 79


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 593 LKKEASNFDCHDYMSECTVEI 655
           LK+  S   C D+  ECT+EI
Sbjct: 9   LKQIQSTLRCIDFSKECTIEI 29


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 511 YRPHIPSERFEEFHRLIQRQLKSCCGQT*KGS 606
           +R  +PS+   + + LI R+  +CC    KG+
Sbjct: 392 HRSALPSQDHWKVYELITRRFLACCSDNAKGA 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,364
Number of Sequences: 5004
Number of extensions: 61629
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)