Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0129
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 31 0.10
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.72
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 27 1.3
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 2.2
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 26 2.9
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 3.9
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.9
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 3.9
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 25 5.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 5.1
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 6.7
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 6.7
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 24 8.9
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 24 8.9
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.9
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 24 8.9
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 30.7 bits (66), Expect = 0.10
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 49 DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 171
+K+ VV EK P + T E PSE Y+ EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 0.72
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 88 PDSMATITMKPEYPPSEVYSTSEPPP 165
P +T + P PP+ STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318
Score = 27.9 bits (59), Expect = 0.72
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 88 PDSMATITMKPEYPPSEVYSTSEPPP 165
P +T + P PP+ STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 76 KEHQPDSMATITMKPEYPPSEVYSTS 153
+ + DS +TI +PEYPP +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 121 EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARS 288
E+ + + S PP + + STSV A A+ +V S+ LG+ +S A ++
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSLSTNTSSTAQKN 270
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 155 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 66
S V +G Y+GFIV++A+ S F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 3.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 135 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 37
RRRIFR H +W+ FF L++ +IY+
Sbjct: 32 RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 85 QPDSMATITMKPEYPPSEVYSTSEPP 162
QP + +T+ P PPS Y+T++PP
Sbjct: 86 QPGNASTMYASP--PPSSNYNTAKPP 109
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 3.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 219 NSGRF-LLHLGNLYIGFELGSSSFIMPSARAAGCNARQRTRFGRQSL 356
NS R +L L LY+GF S ++ +A R++ RFG++ +
Sbjct: 6 NSPRLNILELVLLYVGFFSIGSLNLLQKRKATSDPYRRKNRFGKEPI 52
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 5.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 76 KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYR 174
K DS + T SE YSTS+ PP R
Sbjct: 305 KRQSLDSETSETSSESESESEYYSTSKQPPVKR 337
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 115 KPEYPPSEVYSTSEPPPAYRHRVS 186
K Y P++ +T + PP Y H VS
Sbjct: 201 KGRYYPNKALATDKDPPLYLHIVS 224
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 124 YPPS-EVYSTSEPPPAYRHRVSTS 192
YP + Y+T E PAY R STS
Sbjct: 18 YPTQGQSYNTQEEQPAYPQRFSTS 41
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 24.6 bits (51), Expect = 6.7
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = -1
Query: 82 VLFPSRPNTVYQNLFIA 32
V++PS P+T Y N++++
Sbjct: 133 VIYPSPPSTYYPNMYVS 149
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 88 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSV 195
PD+ +T+T P S +YS+ P Y + +SV
Sbjct: 252 PDTNSTLTYTPSNSQS-IYSSQSQPSPYSRPLLSSV 286
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 168 LSAQGVNFGPDREDCSTNSGRFLLHLGN 251
L A G FG + DC +N+G + +GN
Sbjct: 5 LLASGRKFGVVKSDCISNNGVNVKDVGN 32
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 112 MKPEYPPSEVYSTSEPPP 165
+ P YP S VY E PP
Sbjct: 488 ISPYYPTSSVYGVYESPP 505
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 24.2 bits (50), Expect = 8.9
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -3
Query: 269 LEANIKVPKMKEEATTVSAAIFAIWTEVDTLCR*AGGGSDVLYTSEGGYSGFIVIV 102
L AN K P++ + T A WT VD G+ +L G Y ++V +
Sbjct: 1331 LPANTKAPELDDTNTREILKRDASWTNVD-----VSNGAAILEHEMGLYLSYLVAI 1381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,128
Number of Sequences: 5004
Number of extensions: 35787
Number of successful extensions: 112
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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