Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0128
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   0.79 
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    26   1.8  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   4.2  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   5.5  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    24   7.3  

>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 279 FQFENLFNGNKVLATPVEEFVNSNW 205
           F ++   N N  + TPVE  VNS W
Sbjct: 196 FLYDFTGNANNTVVTPVETAVNSRW 220


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +2

Query: 230 TGVANTLFPLNKFSNWK*APVFTSY----VCF-HDSICQCGLAVSSCHCH 364
           +G   TLF  N+FSN++       Y    V + + S  +CG A  S H H
Sbjct: 2   SGYIRTLFIRNRFSNYRLRSQIIKYKYSNVSYLNKSALRCGQATDSTHPH 51


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 279 FQFENLFNGNKVLATPVEEFVNSNW 205
           F F    N N  + TPVE  + S W
Sbjct: 196 FLFNFSSNANNTVVTPVETAIKSEW 220


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -1

Query: 333 HWHIESWKHTYEVKTGAHFQFENLFNGNKVLATPVEEFVNSNWKDVMQEVAPPIVRSIVS 154
           +W  ++W       T    +F +L    +V+  P   F   +WK+V     PP V  + S
Sbjct: 476 NWRDDAWDFVCHCITDPKDRFCSL---KQVMQHPY--FSKIDWKNVRTAYRPPFVPDLNS 530

Query: 153 EVVA 142
           E+ A
Sbjct: 531 EIDA 534


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 324 IESWKHTYEVKTGAHFQFENLFNGNKVLA 238
           ++  KH    K  A F  EN+FNG  +LA
Sbjct: 323 LQEEKHKPGTKVPAVFLQENIFNGCNMLA 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,325
Number of Sequences: 5004
Number of extensions: 32207
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)