Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0128
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.77 
SB_58850| Best HMM Match : Pro_Al_protease (HMM E-Value=3.9)           27   4.1  
SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)          27   4.1  
SB_42857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35)                      27   7.2  
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   27   7.2  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   7.2  
SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4)             27   7.2  
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.5  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       26   9.5  

>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 327 HIESWKHTYEVKTGAHFQFENLFNGNKVLATPVEEFVN 214
           H E ++   ++ +G + Q ENL N NK+L   +EE  N
Sbjct: 676 HEEEFRQDRDLISGLNMQLENLKNKNKMLHEQLEEVSN 713


>SB_58850| Best HMM Match : Pro_Al_protease (HMM E-Value=3.9)
          Length = 378

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 238 NSRRRICELKLEGRDAGSSPAHRPVHRVRG 149
           + RRR+   +L+G DAG    +R VH +RG
Sbjct: 83  SGRRRV---RLQGADAGKRGGYRNVHVIRG 109


>SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)
          Length = 1052

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 299  SYVCFHDSICQCGLAVSSCHCHQIGCRLDH 388
            SYV   DS+    L V  CHCH+  C+ DH
Sbjct: 999  SYVNLFDSLLP-PLPVEHCHCHK-QCQQDH 1026


>SB_42857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = -1

Query: 351 ELTARPHWHIESWKHTYEVKTGAHFQFENL--FNGNKVLATPVEEFVNSNWKDVMQEVAP 178
           E+  R H   +  KH  E +  A    EN+       ++A  + E   S WK    E  P
Sbjct: 17  EIIRRLHDEYKPVKHEIE-RMRAALGLENMPQVEEEDIMAERILERAPSGWKPEPPEPPP 75

Query: 177 PIVRSIVSEVVAAVNALY-KAVPAEELYLQ 91
           P + S ++   AA   L  K  P+ E + +
Sbjct: 76  PSIASQLAAAAAAAQQLINKRGPSGERHFR 105


>SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35)
          Length = 684

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 323 ICQCGLAVSSCHCHQIGCRLD 385
           +CQC   V  C    +GCR+D
Sbjct: 632 LCQCVDGVMKCEPRPVGCRVD 652


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 246 VLATPVEEFVNSNWKDVMQEVAPPIVRSIVSEVVAAV 136
           VLA+ VE  + S  + V+  +  P++ SIV  V+A++
Sbjct: 586 VLASNVEPVLASIVEPVLASIVEPVLASIVEPVLASI 622


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 142  CCKCPVQGCAGRRTLLAV 89
            C K  V GCAGRR + AV
Sbjct: 981  CLKAVVYGCAGRRKVTAV 998


>SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4)
          Length = 211

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 33  KSNFIYHIYSFPF*NYNKFTASKVLR 110
           +SN +YH+Y F   NY   T +K  R
Sbjct: 86  QSNIVYHVYDFKPLNYLMLTITKERR 111


>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 244 VGNSRRRICELKLEGRDAGSSPAHRPVHRVRGGGCC 137
           VG+S +  C +   G+D G+     P++  + GG C
Sbjct: 25  VGDSYQCSCHVGWIGKDCGTESKCLPINPCQNGGTC 60


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 355  TGADGKATLAYRV-VEAHVRSEDWSS 281
            T   G+A++ + + VE HV  EDWS+
Sbjct: 4727 TNEHGEASMLFNLDVEGHVPEEDWSA 4752


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,418,459
Number of Sequences: 59808
Number of extensions: 255934
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)