Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0128
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    36   2e-04
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.18 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 35.9 bits (79), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -1

Query: 276 QFENLFNGNKVLATPVEEFVNSNWKDVMQEVAPPIVRSIVSEVVAAVNALYKAVPAEELY 97
           +FENLF+GNK L   +  F+N N + + +E+      +         N ++  VP ++++
Sbjct: 191 RFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFNRVPFDKIF 250


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 128 CTRLCRPKNFTCSKLIVILKGKAVYVI 48
           CT++    NFTC +++ +LK +  Y +
Sbjct: 222 CTQVYSTGNFTCLEVVFVLKRRLGYYL 248


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 376 ATDLVTVTGADGKATLAYRVVEAHVRSED 290
           ++D V ++    KAT A   +  H+R+ED
Sbjct: 434 SSDSVLLSPEASKATEAVEFIAEHLRNED 462


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 141  QPPPRTRWTGRWAG 182
            +PPPR  W G   G
Sbjct: 998  KPPPREDWNGEILG 1011


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 151 LGHDGPDDGRGYFLHHVLPV*VHKFFDG 234
           L  D P +  GY    +  +  HK+FDG
Sbjct: 601 LCRDNPAERLGYQKGGISEIQKHKWFDG 628


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -1

Query: 351 ELTARPHWHIESWKHTYEVK 292
           E   R  W +E W+H ++ +
Sbjct: 418 ENNRRNPWFVEFWEHHFQCR 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,608
Number of Sequences: 438
Number of extensions: 2335
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)