Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0124
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   1.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.2  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    26   5.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   7.4  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   9.7  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/57 (38%), Positives = 29/57 (50%)
 Frame = +2

Query: 458  PASALQFY*L*L*MLVYISINHILTFLNLSKMVKHIKFFFNAPGNLLSEYK*LIKKL 628
            P + L+FY   L +LV I   HI +F  L  + K IK F+N   NL      LI+ L
Sbjct: 861  PTNILEFYFQQLSILVLIVRQHIRSF--LPDLFKLIKDFWNPHSNLQFTILSLIESL 915


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 238 LLLFLTSAF*MHFNLLL-QVLIFYFNRIDIITKTWHYFCCL 357
           LL FL+ +F   F   L Q+ I YF+   I+   + +F C+
Sbjct: 123 LLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCV 163


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 154 LIQLILKFYDLCI*LIKTLFWN 89
           L+Q  LK YDLCI +I TL  N
Sbjct: 152 LLQCCLKHYDLCIPVICTLSSN 173


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -1

Query: 739 KLDSQNLLHILWIQLILNVFSCSNINYKFNHDH 641
           ++++  LL + ++ L++N+      N+  NHDH
Sbjct: 447 QMNTDQLLLVSFLGLVVNLVGILAFNHGHNHDH 479


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 132 NFRINWISLIQNSALSLSTTLNTVKLLWLSGLHSQIVVIFD*CFL 266
           N   N    I N+ LSL++TLNT    +++ L+S +   F   FL
Sbjct: 442 NINNNMFGSIHNTTLSLNSTLNT----FMNELNSSMTSAFGDTFL 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,714
Number of Sequences: 5004
Number of extensions: 61355
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)