Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0124
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29119| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   4.5  
SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_29119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 421 LILLTPSMPLDATSFSFTVLLTVIVNVSIYINKSYFNFLK 540
           + L+TP++PL A++ +F     V  NVS  + + ++ F K
Sbjct: 135 ITLITPALPLTASNCTFLNYCRVQYNVSDLVKREFYTFTK 174


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 423 NSVDPFHAPRCNQLQLYSFIDC 488
           +S+ P H PRCNQ   Y  + C
Sbjct: 577 SSLRPVHVPRCNQYGAYENVQC 598


>SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +1

Query: 694 LTVSIKCVTSSVNQVSLSH*YHHY 765
           +T+ I  +T+++NQ SLSH ++H+
Sbjct: 30  ITIIIVIITTTINQPSLSHHHNHH 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,053,701
Number of Sequences: 59808
Number of extensions: 407954
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)