Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0124
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 817 LTA*NYSALSSMVHQFFSNGDISVTVKLDSQNLLHILWIQLILN 686
           LT  NYS L+  +    S G   + + + S  ++ I W+   LN
Sbjct: 202 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLN 245


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 817 LTA*NYSALSSMVHQFFSNGDISVTVKLDSQNLLHILWIQLILN 686
           LT  NYS L+  +    S G   + + + S  ++ I W+   LN
Sbjct: 141 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLN 184


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 621 LISYLYSLSRFPGALKKNLI 562
           ++SY  S SR  G LK NLI
Sbjct: 176 IVSYPKSRSRKKGGLKDNLI 195


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 703 IQLILNVFSCSNINYKFNHDHDKCYQFLNQLFILT*QIP 587
           I  + N ++ +N NYK+N+++     +     I   QIP
Sbjct: 315 ISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQIP 353


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 296 KTCNNKLKC 270
           KTCN+K KC
Sbjct: 438 KTCNSKTKC 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,177
Number of Sequences: 438
Number of extensions: 3954
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)