Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0123
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       26   5.0  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    26   5.0  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   6.7  

>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 156 TVHRVNNTIIGTLPAINNVF 97
           T++++ +TII T PAIN V+
Sbjct: 232 TMYKMADTIINTYPAINEVY 251


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 192 RLFAYGPVKKYKTVHRVNNTIIGTLPAINNVFKTSV*NCDQFSNKNFGKIF*FL 31
           R F Y P    + V   N+TI         + K +     QF +K F  IF FL
Sbjct: 36  RKFHYSPFILQEKVQSSNHTIRSDTKLWKRLLKITGKQAHQFKDKPFSHIFAFL 89


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 47  LPKFLLLNW--SQFYTEVLNTLLIAGRVPIIVLFTLCTVLYFF 169
           L   L+L+W  +++ T + + L    ++P+I+ F    V+ FF
Sbjct: 258 LALLLILSWGYTRYSTNMRDRLFTEAKIPLIICFFALFVVRFF 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,657
Number of Sequences: 5004
Number of extensions: 62219
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)