Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0123
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391...    30   1.7  
02_01_0145 + 1040798-1040934,1041152-1041194,1041999-1042076,104...    29   3.0  
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    29   4.0  
01_07_0024 - 40559423-40559863,40559959-40560192,40560546-405608...    29   4.0  

>08_02_1395 -
           26737972-26738418,26738505-26738738,26738887-26739183,
           26739399-26739581,26739778-26739834,26739960-26740016,
           26740228-26740322,26740714-26740765,26740821-26740910
          Length = 503

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 229 FFYTYIFSTNYLLYYYFIVCTGYI 300
           FFY ++FST  L  Y F  C  YI
Sbjct: 282 FFYMFVFSTTLLCLYVFAFCWVYI 305


>02_01_0145 +
           1040798-1040934,1041152-1041194,1041999-1042076,
           1042444-1042544,1042900-1042994,1043161-1043229,
           1043432-1043501,1043757-1043820,1043907-1043947,
           1044098-1044182,1044608-1044682
          Length = 285

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 56  FLLLNWSQFYTEVLNTLLIAGRVPIIVLFTLCTVLYFFTG 175
           F    W  F+T  L   ++ G    ++L  LC    FFTG
Sbjct: 113 FYCATWEHFFTNTLILPIVNGPTEGLMLIYLCHFFTFFTG 152


>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 229 FFYTYIFSTNYLLYYYFIVCTGYI 300
           FFY ++FST  L  Y F  C  YI
Sbjct: 167 FFYMFVFSTTLLCLYVFGFCWVYI 190


>01_07_0024 -
           40559423-40559863,40559959-40560192,40560546-40560842,
           40561048-40561230,40561534-40561590,40561851-40561937
          Length = 432

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 229 FFYTYIFSTNYLLYYYFIVCTGYI 300
           FFY ++FST  L  Y F  C  YI
Sbjct: 213 FFYMFVFSTTLLCLYVFGFCWVYI 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,784
Number of Sequences: 37544
Number of extensions: 286402
Number of successful extensions: 519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)