Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0123
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_17245| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)           29   3.1  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_3618| Best HMM Match : C2 (HMM E-Value=4.8e-23)                     28   9.4  

>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 624 RVITVFTIGWIYFKFDTASRYSLKKNICIIYTKLS 520
           RV+ V  I W++    T+S+Y + +++C + T ++
Sbjct: 154 RVLCVIVIMWLFMVMVTSSQYFISRSVCFLLTAIT 188


>SB_17245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 232 FYTYIFSTNYL--LYYYFIVCTGYIKINIFH*VFNTNCLYELFKYLPRKKI*ELFA-EYF 402
           F    FS  YL     + +  T Y+ + + H +F T CL  + +YLP      LFA  YF
Sbjct: 177 FVHRFFSIRYLPLAVCHSLFGTRYLPLAVCHSLFATRCLLFVTRYLPLAICHTLFATRYF 236

Query: 403 P 405
           P
Sbjct: 237 P 237


>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
          Length = 341

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
 Frame = +1

Query: 181 RKKPCKMLS*TNYEVHFFYTYIFSTNYLLYYYFIVCTGYIKINIFH*VFNTNCLYELFKY 360
           R K   ++   ++EVH   T  F + Y L ++FI+    + ++  H   +   LY     
Sbjct: 26  RIKASTVMPAVSFEVHLGLTICFISIYTLLFFFILVQLCLILHYKHRRLSYQSLYLFVCL 85

Query: 361 LPRKKI*ELFAEYFPVLDI--SLHKYLSIYFYYLAFNLCSYYVNIVDLFVM 507
           L       LFA YF   D   SL  + S + Y L   L    + ++ LF++
Sbjct: 86  LWAAIRTTLFAFYFNDCDTANSLTAFPSWFLYALPIYLQFLMLCLLTLFMV 136


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +1

Query: 217 YEVHFFYTYIFSTNYLLYYYFIVCTGYIKINIFH*VFNTNCLYELFKYL 363
           Y   + YTY ++  Y+  Y ++    Y+ + ++  V+    LY+   YL
Sbjct: 40  YTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVYVYVYIYIYLYDSIAYL 88


>SB_3618| Best HMM Match : C2 (HMM E-Value=4.8e-23)
          Length = 486

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 534 YTKLSEVSDHYKQIYNVD 481
           Y KL +V DHYKQ+ +++
Sbjct: 252 YNKLQQVQDHYKQLKSIE 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,603,846
Number of Sequences: 59808
Number of extensions: 398136
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)