Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0123
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66290.1 68414.m07528 F-box family protein contains F-box dom...    33   0.27 
At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ...    31   0.83 
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ...    29   2.5  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    29   4.4  

>At1g66290.1 68414.m07528 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 453

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 53  KFLLLNWSQFYTEVLNTLLIAGRVPIIVLFTLC 151
           K L+L+W +FY E    +L++G  P++  FTLC
Sbjct: 175 KVLVLDWVEFYNEFAFDMLMSG-CPVLESFTLC 206


>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 410

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 229 FFYTYIFSTNYLLYYYFIVCTGYIK 303
           FF+ ++FST  L  Y F  C  YIK
Sbjct: 191 FFFMFVFSTTLLCVYVFAFCCVYIK 215


>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 443

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 229 FFYTYIFSTNYLLYYYFIVCTGYIK 303
           FF+ ++FST  L  Y F  C  YI+
Sbjct: 193 FFFMFVFSTTLLCIYVFAFCWVYIR 217


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 238 CKKNALHNLFSSTFCTAFCVWT 173
           C  +  + LF   FC+  CVWT
Sbjct: 547 CPDSVYYKLFEKVFCSWLCVWT 568


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,613
Number of Sequences: 28952
Number of extensions: 273601
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)