Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0122
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 76 2e-15
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 51 7e-08
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 49 2e-07
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 46 1e-06
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 45 4e-06
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 42 2e-05
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 41 7e-05
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 39 3e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 5e-04
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 35 0.004
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 34 0.006
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 33 0.014
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 31 0.043
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 31 0.043
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 30 0.100
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 29 0.17
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 29 0.30
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 28 0.53
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 27 0.70
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 0.93
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 0.93
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 2.1
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 2.8
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 3.7
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 25 4.9
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 4.9
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 24 6.5
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 24 6.5
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 24 6.5
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 24 6.5
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 24 8.6
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.6
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 24 8.6
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 24 8.6
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 24 8.6
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 24 8.6
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 76.2 bits (179), Expect = 2e-15
Identities = 40/59 (67%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Frame = +3
Query: 195 NGAPQTKVC-QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTT 368
N AP+ V KLVLLG+SAVGKSSLVLRFVK QF +Y+ESTIGAAFLTQ + D+ T
Sbjct: 4 NTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENT 62
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 50.8 bits (116), Expect = 7e-08
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +3
Query: 222 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTT 368
+FKLV LGE +VGK+SL+ RF+ QF ++TIG FL++ + +D T
Sbjct: 11 KFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRT 59
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 49.2 bits (112), Expect = 2e-07
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +3
Query: 225 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDD 362
FK VL+G+S VGKS+L++RF + +F+ +STIG F T+ I D+
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDN 56
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 46.4 bits (105), Expect = 1e-06
Identities = 20/45 (44%), Positives = 34/45 (75%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDD 362
K+++LGES VGK+S++ ++V +F + ++TIGA FLT+ + DD
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDD 54
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 44.8 bits (101), Expect = 4e-06
Identities = 21/45 (46%), Positives = 32/45 (71%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDD 362
K+V+LG+S VGK+ L+ +FV +F ++TIGA FLT+ + DD
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDD 54
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 42.3 bits (95), Expect = 2e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +3
Query: 225 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTT 368
FKL+L+G+S VGKS L+LRF + E STIG F + + T
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKT 56
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 40.7 bits (91), Expect = 7e-05
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDT 365
K+ ++G+S++GK+SL++ +V+G F E T+G F+ + I +T
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNT 57
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 38.7 bits (86), Expect = 3e-04
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFD 359
KL+L+G+S VGKS L+LRF + F +TIG F + I D
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELD 54
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.9 bits (84), Expect = 5e-04
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAI 350
K+VL G S GKS L+ RFVK Q+ + T+G F ++ I
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRII 51
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 35.1 bits (77), Expect = 0.004
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 323
K+V+LG+ A GK+SL+ F KG F + E TI
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTI 46
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 34.3 bits (75), Expect = 0.006
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 204 PQTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 326
PQ V FKLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 4 PQN-VPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLG 43
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.1 bits (72), Expect = 0.014
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +3
Query: 210 TKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 323
T + ++KLV++G+ VGKS+L ++ ++ F + + TI
Sbjct: 4 TYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI 41
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 31.5 bits (68), Expect = 0.043
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 323
KLV++G+ A GK+ L++ F KG F E T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.5 bits (68), Expect = 0.043
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 323
KLV++G+ A GK+ L++ F KG F E T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 30.3 bits (65), Expect = 0.100
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAF 335
++ +LG +VGKSSL +++V+ F E TI F
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF 43
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.17
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 137 SYNNREGYGDKQDRSRTEAQWRSTDKSLPVQAG 235
S ++R+G GDK+ RS T++ W S KS+ +G
Sbjct: 7 SDDSRDGEGDKRLRSTTKSTWLSFLKSIATFSG 39
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 28.7 bits (61), Expect = 0.30
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 228 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 341
KLV++G+ GK+ L++ F G F E T+ ++T
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYIT 53
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 0.53
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 207 QTKVCQFKLVLLGESAVGKSSLVLRFVKGQF 299
Q++ + KLV++G+ A GK+SL+ F G F
Sbjct: 3 QSQPIRRKLVVVGDGACGKTSLLSVFTLGYF 33
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 27.5 bits (58), Expect = 0.70
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 194 GPLCGSGPVCRHIPPCYCSSVLNFFLGDRSSRSRRDTEIIINYTLKQ 54
G + SG HI P Y S VLN +G R T +I+ L++
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRK 196
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 27.1 bits (57), Expect = 0.93
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 263 LAYRRLAQQHQLELADFCLWSAIGPLCGSGPVCRHIPPCYCSSVLNFFLGDRSS 102
+A + Q +LE ++ W+ +G L R CY S+L L +RSS
Sbjct: 914 VAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLL---LNERSS 964
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 0.93
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 292 PLTNRSTSEDLPTADSPNNTSLN 224
P N TS+DL DSPN + +N
Sbjct: 376 PSENSDTSDDLTKVDSPNKSLVN 398
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 337 RNAAPMVLSWYSWNCPLT-NRSTSEDLPTADSPNNTSL 227
++ A V+ +W CPLT N +T + L ++P++ SL
Sbjct: 109 KSGAVRVIPPDNWKCPLTINTTTFKFLTRKNNPSSMSL 146
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 2.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 304 SWNCPLTNRSTSEDLPTADS 245
S N P N T EDLPT D+
Sbjct: 263 SENVPKPNAETQEDLPTIDA 282
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 3.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 259 PTADSPNNTSLNWQTFVCGAPLGLCAAPVLFVAIS 155
P+ +P +NW V GAP+ A +++ AIS
Sbjct: 486 PSVKNPTPAEMNWTCLVFGAPM---LAVLIWYAIS 517
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 89 HGDFVKICRPRKSSERSYNNREG 157
HGD ++ + +K+ R Y NR G
Sbjct: 213 HGDVGQVYKQKKTKYRQYMNRPG 235
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 4.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 98 FVKICRPRKSSERSYNNREGYGD 166
+++ R ++ E+ Y NR GY D
Sbjct: 598 YIRRLREKRELEKQYQNRRGYYD 620
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 24.2 bits (50), Expect = 6.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 132 NGATITGRDMATNRTGAAQRPNGAPQTKVCQFKLVLLGESAVGKSSL 272
NG + +G N Q N + + K +K++LLG S GKS++
Sbjct: 5 NGLSESGESKKLNSKIEKQIENASKKDKKI-YKVLLLGASDSGKSTI 50
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.2 bits (50), Expect = 6.5
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 66 VINDNFGVTATS*RSVAQEKVQNGATITGRDMATNRTGAAQRPNGAPQTKVCQFKLVLLG 245
V++ +FGV T SVA + ++ + + GA + G K FK + L
Sbjct: 836 VLHQSFGVKLTGATSVASDPLKGSISKNASIILIGMRGAGKTTIGKIIAKQLNFKFLDLD 895
Query: 246 E 248
E
Sbjct: 896 E 896
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 225 FKLVLLGESAVGKSSLV 275
F +++LGES GKS+LV
Sbjct: 96 FNVLVLGESGSGKSTLV 112
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 231 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIR 353
+V+ GE+ GKS+ V++F+ + E + TQ R
Sbjct: 596 VVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQPRR 636
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 325 PMVLSWYSWNCPLTNRSTSEDLPTADSPNNTS 230
PM + S + +TN STS DLPT++ P+ +
Sbjct: 314 PMTSNLTSNSGSMTN-STSTDLPTSNLPSQNA 344
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 22 SSFTFTINDYICLSV*LMIISVSRRLREDLSPKKKFRTEL 141
S +F+ +D+I ++ M+ VSR + L+ KK +++L
Sbjct: 712 SYVSFSDDDFISATLLYMLEDVSRNKSQLLAEKKHLKSQL 751
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 334 NAAPMVLSWYSWNCPLTNRSTSEDLPTADSPN 239
N +L++Y C L S E L SPN
Sbjct: 449 NIKTAILNYYQKQCSLVKDSNEEGLKNFVSPN 480
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 23.8 bits (49), Expect = 8.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 370 AVVSSNRMAWVRNAAPMVLSWYSWNCPLTNRSTSEDLPTADSPNNT 233
A +S +A R VLS+ N P+ S+SE T + NN+
Sbjct: 72 AELSKGELAKAREDLKSVLSFLKNNLPVDTESSSEAF-TIEKDNNS 116
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = -1
Query: 259 PTADSPNNTSLNWQTFVCGAPLGLC 185
P+ +PN +NW V G + C
Sbjct: 470 PSYQNPNKVEMNWAIVVLGFTVFFC 494
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 161 HIPPCYCSSVLNFFLGDRSSRSRRDTEIII 72
H+PP S+ N+ LG++S+ S + +I++
Sbjct: 862 HVPPRPSKSLWNWLLGEQST-SAEELDILL 890
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,915
Number of Sequences: 5004
Number of extensions: 29660
Number of successful extensions: 119
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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