Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0120
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.2  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    26   5.5  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   7.3  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 2    TGRSLRTGMPIEFKC-FLGPTPDNISS*GDAMGPADRITSFRASTMCFN 145
            TG  + T + I + C  L P         ++ G  + + +F  +T+CFN
Sbjct: 902  TGDKVETAINIGYSCNLLDPNMTIFRIDANSFGALEEVEAFIRNTLCFN 950


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = +2

Query: 215 VSGKMCKFCRFFCLCRNTFAALCR----CPL 295
           ++  +C F  FF  C  T  A+CR    CPL
Sbjct: 337 ITSAICMFTIFFVPCARTLWAICRHLRTCPL 367


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = -2

Query: 369 IFGHPTIDYNSPHQLGFGYVQAITTKGHRQSAAKVFLHRQKKRQN------LHILPDTYV 208
           +F H  + + + H L      AIT +   +S+     +R  ++ N      LH LP    
Sbjct: 74  LFEHQVVCFPNQHNLPPETQYAITHRFDPESSTYGHGNRTNQQNNSILHPDLHTLPGVPQ 133

Query: 207 TKILIDARTKTAYGVEYVRNRLKH 136
            +++     K  YG+E V  RLKH
Sbjct: 134 VQLIGHGVVKDHYGLEEV--RLKH 155


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 98  PADRITSFRASTMCFNLFRTYSTP*AVLVRASMSILVTYVSG 223
           P   ITS +AST+      T +T  AV V A+ +  VT  +G
Sbjct: 190 PPPTITSTKASTVTSTEATTVTTTTAVTVTATETYTVTATNG 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,342
Number of Sequences: 5004
Number of extensions: 60107
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)